View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_low_66 (Length: 250)

Name: NF1690_low_66
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_low_66
NF1690_low_66
[»] chr1 (18 HSPs)
chr1 (8-245)||(8648633-8648873)
chr1 (8-245)||(39286699-39286932)
chr1 (8-240)||(30819153-30819388)
chr1 (47-216)||(43998257-43998421)
chr1 (96-235)||(16385041-16385181)
chr1 (95-235)||(16148538-16148678)
chr1 (13-108)||(20412032-20412130)
chr1 (13-114)||(44538038-44538142)
chr1 (96-205)||(23298750-23298860)
chr1 (96-231)||(20860842-20860977)
chr1 (13-76)||(17716526-17716589)
chr1 (13-76)||(52236102-52236165)
chr1 (13-75)||(26134756-26134818)
chr1 (8-45)||(8648584-8648621)
chr1 (13-76)||(16431342-16431405)
chr1 (96-155)||(25405179-25405237)
chr1 (8-45)||(20411978-20412015)
chr1 (13-70)||(48256086-48256143)
[»] chr7 (30 HSPs)
chr7 (8-245)||(9264463-9264703)
chr7 (13-240)||(6257596-6257826)
chr7 (13-240)||(19515445-19515674)
chr7 (13-240)||(1462347-1462569)
chr7 (99-238)||(4460850-4460988)
chr7 (95-235)||(11483955-11484094)
chr7 (8-115)||(9194198-9194308)
chr7 (8-115)||(48713246-48713357)
chr7 (8-115)||(9004403-9004513)
chr7 (13-114)||(14941919-14942023)
chr7 (13-114)||(15369512-15369616)
chr7 (13-136)||(10204465-10204590)
chr7 (13-115)||(4313014-4313119)
chr7 (15-77)||(21005708-21005770)
chr7 (139-235)||(4256702-4256798)
chr7 (13-77)||(15707470-15707534)
chr7 (13-77)||(25181199-25181263)
chr7 (13-76)||(4307644-4307707)
chr7 (96-231)||(4983245-4983379)
chr7 (202-240)||(21005644-21005682)
chr7 (8-61)||(4461012-4461065)
chr7 (13-74)||(16897519-16897580)
chr7 (13-74)||(33609489-33609550)
chr7 (153-230)||(38877319-38877396)
chr7 (13-76)||(8880187-8880250)
chr7 (13-76)||(13434658-13434721)
chr7 (13-76)||(16463456-16463519)
chr7 (17-75)||(649018-649076)
chr7 (13-50)||(9004359-9004396)
chr7 (8-45)||(48713197-48713234)
[»] scaffold0168 (2 HSPs)
scaffold0168 (8-245)||(8935-9174)
scaffold0168 (13-41)||(9190-9218)
[»] chr6 (29 HSPs)
chr6 (8-240)||(26017686-26017921)
chr6 (8-240)||(26157059-26157294)
chr6 (8-240)||(5399005-5399239)
chr6 (8-240)||(25507370-25507605)
chr6 (8-226)||(26138440-26138661)
chr6 (8-240)||(17739399-17739634)
chr6 (13-240)||(29253766-29253986)
chr6 (98-238)||(18396590-18396729)
chr6 (96-238)||(12660554-12660694)
chr6 (102-238)||(12658119-12658254)
chr6 (106-240)||(23517428-23517561)
chr6 (106-240)||(23574753-23574886)
chr6 (139-240)||(23524029-23524130)
chr6 (106-235)||(13217402-13217530)
chr6 (139-235)||(25031306-25031402)
chr6 (139-234)||(28734229-28734324)
chr6 (8-76)||(23574910-23574978)
chr6 (13-76)||(23517585-23517648)
chr6 (19-136)||(17284234-17284353)
chr6 (13-76)||(25949099-25949162)
chr6 (13-76)||(25963699-25963762)
chr6 (13-76)||(25968346-25968409)
chr6 (13-76)||(32543034-32543097)
chr6 (8-77)||(5949881-5949951)
chr6 (8-61)||(18234089-18234142)
chr6 (139-234)||(3923554-3923642)
chr6 (139-227)||(18993097-18993185)
chr6 (96-205)||(19612856-19612966)
chr6 (96-132)||(24393070-24393106)
[»] scaffold0012 (2 HSPs)
scaffold0012 (13-240)||(49665-49895)
scaffold0012 (8-45)||(49611-49648)
[»] chr5 (11 HSPs)
chr5 (8-239)||(20104010-20104245)
chr5 (8-240)||(20738121-20738355)
chr5 (8-240)||(2953620-2953854)
chr5 (139-235)||(16676983-16677079)
chr5 (139-227)||(12410430-12410517)
chr5 (13-114)||(23343733-23343836)
chr5 (13-114)||(20967544-20967648)
chr5 (13-77)||(15059229-15059293)
chr5 (8-115)||(21273415-21273525)
chr5 (13-50)||(21273371-21273408)
chr5 (8-45)||(25486011-25486048)
[»] chr3 (16 HSPs)
chr3 (87-240)||(20225344-20225497)
chr3 (106-249)||(17023106-17023248)
chr3 (96-238)||(13069632-13069773)
chr3 (106-240)||(22038747-22038870)
chr3 (30-116)||(13601524-13601613)
chr3 (13-114)||(14495006-14495110)
chr3 (13-114)||(14660974-14661078)
chr3 (8-77)||(22038655-22038723)
chr3 (8-61)||(34053879-34053932)
chr3 (13-76)||(11398665-11398728)
chr3 (13-76)||(25054811-25054874)
chr3 (13-76)||(36075971-36076034)
chr3 (8-115)||(19567208-19567318)
chr3 (13-75)||(3245284-3245346)
chr3 (8-50)||(25766018-25766060)
chr3 (8-65)||(17023013-17023070)
[»] scaffold0264 (1 HSPs)
scaffold0264 (30-240)||(22486-22699)
[»] chr8 (11 HSPs)
chr8 (96-240)||(26853930-26854073)
chr8 (106-240)||(21319289-21319422)
chr8 (13-98)||(9973-10061)
chr8 (8-235)||(24341824-24342056)
chr8 (8-114)||(14351827-14351936)
chr8 (13-114)||(18161796-18161899)
chr8 (13-115)||(24967058-24967163)
chr8 (162-235)||(19792320-19792393)
chr8 (99-229)||(24221647-24221778)
chr8 (8-76)||(10035-10100)
chr8 (8-65)||(21319207-21319264)
[»] chr4 (18 HSPs)
chr4 (8-240)||(38651915-38652149)
chr4 (96-235)||(11922539-11922679)
chr4 (97-231)||(5513735-5513868)
chr4 (8-115)||(10730923-10731032)
chr4 (8-115)||(10944692-10944801)
chr4 (96-235)||(12346040-12346180)
chr4 (13-114)||(24125411-24125515)
chr4 (13-114)||(21275028-21275132)
chr4 (14-74)||(3772439-3772499)
chr4 (13-65)||(11902867-11902919)
chr4 (13-77)||(45233926-45233990)
chr4 (13-76)||(31593668-31593731)
chr4 (13-114)||(15409827-15409931)
chr4 (95-205)||(33331118-33331228)
chr4 (13-74)||(45244498-45244559)
chr4 (153-231)||(23793690-23793768)
chr4 (8-61)||(11889249-11889302)
chr4 (97-230)||(9487138-9487270)
[»] scaffold0713 (1 HSPs)
scaffold0713 (95-240)||(6783-6930)
[»] chr2 (22 HSPs)
chr2 (8-238)||(25337243-25337474)
chr2 (57-230)||(25858726-25858907)
chr2 (156-240)||(24366379-24366463)
chr2 (96-231)||(15583668-15583804)
chr2 (156-240)||(24369102-24369186)
chr2 (13-114)||(25481174-25481278)
chr2 (13-114)||(25488780-25488884)
chr2 (8-77)||(44998003-44998072)
chr2 (13-77)||(24507107-24507171)
chr2 (9-76)||(32441634-32441701)
chr2 (8-61)||(29568738-29568791)
chr2 (8-116)||(23140169-23140280)
chr2 (8-116)||(23551959-23552070)
chr2 (96-231)||(19013119-19013255)
chr2 (96-227)||(19124430-19124560)
chr2 (13-114)||(16134381-16134485)
chr2 (139-231)||(20852025-20852116)
chr2 (13-76)||(20281826-20281889)
chr2 (8-50)||(23140287-23140329)
chr2 (8-50)||(23552077-23552119)
chr2 (8-61)||(15583541-15583594)
chr2 (8-45)||(44997954-44997991)
[»] scaffold0213 (1 HSPs)
scaffold0213 (96-238)||(21509-21650)
[»] scaffold0098 (1 HSPs)
scaffold0098 (19-100)||(44502-44586)
[»] scaffold0092 (1 HSPs)
scaffold0092 (8-77)||(19762-19831)
[»] scaffold0471 (1 HSPs)
scaffold0471 (13-114)||(9999-10103)
[»] scaffold0197 (1 HSPs)
scaffold0197 (13-76)||(9109-9172)
[»] scaffold0251 (1 HSPs)
scaffold0251 (13-114)||(19133-19237)
[»] scaffold0058 (1 HSPs)
scaffold0058 (30-114)||(61657-61744)
[»] scaffold0031 (2 HSPs)
scaffold0031 (13-77)||(100165-100229)
scaffold0031 (13-70)||(23060-23117)
[»] scaffold0057 (1 HSPs)
scaffold0057 (13-76)||(20955-21018)
[»] scaffold0064 (1 HSPs)
scaffold0064 (13-111)||(48586-48687)
[»] scaffold0371 (1 HSPs)
scaffold0371 (13-114)||(9280-9384)
[»] scaffold0334 (1 HSPs)
scaffold0334 (8-65)||(6977-7034)
[»] scaffold0096 (2 HSPs)
scaffold0096 (13-70)||(38210-38267)
scaffold0096 (34-114)||(38141-38224)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 8648633 - 8648873
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||    
T  8648633 ccaaaaatatgaagatctcatgcaaaaatatattgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcgacccttttacccttttgct 8648732  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8648733 gcttttgcttcttcaacaaagctgcctattttagtatttatgacctagagcccatggtttcttgtgcaacaatttagtgatttaattcttggggctcaag 8648832  T
Q  205 tcaatgttagactataaatagagcagccatctagttgtaaa 245  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8648833 tcaatgttagactataaatagagcagccatctagttgtaaa 8648873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 39286932 - 39286699
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||   ||||||||||||||||        |||    
T  39286932 ccaaaaatatgaagatctcatgcaaaaa-atattgtgcaaagaatttggagatcttgtgcaaaaatataacaagtggcgcaaccctttt--------gct 39286842  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39286841 gcttttgcttcttcgacaaagctgcctattttagtatttctgacctagagcctatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 39286742  T
Q  205 tcaa--tgttagactataaatagagcagccatctagttgtaaa 245  Q
    ||||  |||||||||||||||||||||||||||||||||||||    
T  39286741 tcaatgtgttagactataaatagagcagccatctagttgtaaa 39286699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 30819388 - 30819153
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataag--tggcgcaacccttttac-ccttttgct 104  Q
    |||| ||||||||||||| || |||||||||||||||| ||||| ||||||||| |   | |||||||||   ||||||  |||||||   |||||||||    
T  30819388 ccaaaaatatgaagatcttatacaaaaatatattgtgcaaagaaattgaagatccttcaccaaaatataaagatggcgcgcccctttttgtccttttgct 30819289  T
Q  105 gcttttgcttcttcgacaaagccgcctatttt-agtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaa 203  Q
    |||||||||||| |||||| ||  |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  30819288 gcttttgcttctccgacaa-gctacctatttttagtatttctgacctagagcccatggtttcttgtgcaacattttagtgatttaattcttggggctcaa 30819190  T
Q  204 gtcaatgttagactataaatagagcagccatctagtt 240  Q
     ||||||||||||||||||||||||||||||||||||    
T  30819189 atcaatgttagactataaatagagcagccatctagtt 30819153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 43998257 - 43998421
Alignment:
Q  47 aagaatttgaagatcttgtgcaaaaatata---agtggcgcaacccttttacccttttgctgcttttgcttcttcgacaaagccgcctattttagtattt 143  Q
    ||||||||||||||||||||||||||||||   |||||||| |||||||||||||||         ||||||||| ||||| | |||||||||| | |||    
T  43998257 aagaatttgaagatcttgtgcaaaaatatatcaagtggcgcgacccttttacccttt---------tgcttcttcaacaaatctgcctattttaattttt 43998347  T
Q  144 ctgacctagagcccatggtttcttatgcaacaatttagtgatttaattctt-ggggctcaagtcaatgttagac 216  Q
    |||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43998348 ctgacctaaagcctatggtttcttgtgcaacaatttagtgatttaattcttgggggctcaagtcaatgttagac 43998421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 16385181 - 16385041
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    |||||||||||||||||||||||||||| ||  ||| ||| |||  |||||||||||| ||||||  ||||||| || |||| | |||||||||| |||     
T  16385181 ccttttgctgcttttgcttcttcgacaa-gcttcctgtttgagtttatttctgacctaaagcccacagtttcttgtgtaacactctagtgatttatttcg 16385083  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    | ||||| ||||||||||||||||||||||||||||||||||    
T  16385082 tagggcttaagtcaatgttagactataaatagagcagccatc 16385041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 16148678 - 16148538
Alignment:
Q  95 cccttttgctgctttt-gcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    |||||||||||||||| ||||| | ||||| || |||||||    ||||| ||||||| ||||| ||||||||| ||||| | |||||||||||| ||||    
T  16148678 cccttttgctgctttttgcttcctggacaa-gctgcctattagtttatttttgacctaaagcccgtggtttcttgtgcaatactttagtgatttatttct 16148580  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    | ||||| ||||||||||||||||||||||||||||||||||    
T  16148579 tagggcttaagtcaatgttagactataaatagagcagccatc 16148538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 20412032 - 20412130
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgctgctt 108  Q
    |||||||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||   |||| ||   |||||||||||||||||||||    
T  20412032 aatatgaagatctcatacaaaaatatctggtgcaaagaaattgaagatcttgtgcaaaaatataacaagtggtgcgctccttttacccttttgctgctt 20412130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 44538038 - 44538142
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || ||| |||||||||||||    
T  44538038 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatactcttttgctgcttt 44538137  T
Q  110 tgctt 114  Q
    |||||    
T  44538138 tgctt 44538142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 23298750 - 23298860
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    ||||||||||||||||||||| ||| |||||  |||| ||||||  |||||||||||| |||||||||||| || || |||| |||| |||| || ||||    
T  23298750 ccttttgctgcttttgcttctccga-aaagctacctaatttagtttatttctgacctaaagcccatggttttttgtggaacattttattgatgtatttct 23298848  T
Q  194 tggggctcaagt 205  Q
    ||||||| ||||    
T  23298849 tggggcttaagt 23298860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 20860977 - 20860842
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    |||||| ||||||||||||||||||||| || | || ||| |||  |||||||||||| ||||||||||||||| || |||| |  | |||| || ||||    
T  20860977 ccttttactgcttttgcttcttcgacaa-gctgtctgtttaagtttatttctgacctaaagcccatggtttcttgtggaacattccattgatgtatttct 20860879  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagc 231  Q
    ||||||| |||| | |  ||||||||||||||||||||    
T  20860878 tggggcttaagt-agttgtagactataaatagagcagc 20860842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 17716526 - 17716589
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  17716526 aatatgaatatctcatacaaaaatatcctgtgcaaagaatttgaagatcttgtacaaatatata 17716589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 52236165 - 52236102
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  52236165 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 52236102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 26134818 - 26134756
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat 75  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| ||||    
T  26134818 aatatgaatatctcatacaaaaatattctgtgcaaagaatttgaagatcttgtacaaatatat 26134756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 8648584 - 8648621
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgc 45  Q
    |||| |||||||||||||||||||||||||||||||||    
T  8648584 ccaaaaatatgaagatctcatgcaaaaatatattgtgc 8648621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 16431342 - 16431405
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| || |||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  16431342 aatatgaatatttcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 16431405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 25405237 - 25405179
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagc 155  Q
    ||||||||| ||||||||||||||| || || | |||||||||||| |||||||||||||    
T  25405237 ccttttgctacttttgcttcttcgataa-gctgtctattttagtatgtctgacctagagc 25405179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 20411978 - 20412015
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgc 45  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  20411978 ccaaaaatataaagatctcatgcaaaaatatattgtgc 20412015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 48256086 - 48256143
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaa 70  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||| ||||| ||||    
T  48256086 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagaacttgtacaaa 48256143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 9264703 - 9264463
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||   |||| ||||||||||||||||||||||    
T  9264703 ccaaaaatatgaagatctaaagcaaaaatatattgtgcgaagaatttgaatatcttgtgcaaaaatataacaagtggtgcaacccttttacccttttgct 9264604  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9264603 gcttttgcttcttcgacaaagctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacaatttagtgatttaattcttggggctcaag 9264504  T
Q  205 tcaatgttagactataaatagagcagccatctagttgtaaa 245  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  9264503 tcaacgttagactataaatagagcagccatctagttgtaaa 9264463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 6257826 - 6257596
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgctgcttt 109  Q
    ||||||||||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||||   |||||||| ||||||| ||||||| |||||||    
T  6257826 aatatgaagatctaatacaaaaatatcttgtgcaaagaatttgaagatcttgtacaaaaatataacaagtggcgcaccccttttgcccttttcctgcttt 6257727  T
Q  110 tgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaat 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||||||| |||||||||| |||    
T  6257726 tgcttcttcgacaaagctgcctattttagtatttctgacctagtccccatggtttcttgtgcaacactttagtgatttaattcttagggctcaagtaaat 6257627  T
Q  210 gttagactataaatagagcagccatctagtt 240  Q
    ||||||||||| |||||||||||||||||||    
T  6257626 gttagactatatatagagcagccatctagtt 6257596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 19515674 - 19515445
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||||||||||| | ||||||| || ||| |||||||||||||||| || ||| |||||  |||||||||   || ||||||||||||| ||||||    
T  19515674 aatatgaagatctcataccaaaatatcttatgcaaagaatttgaagatctcgtacaataatatgaaagtggcgcgctccattttacccttttgttgcttt 19515575  T
Q  110 tgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaat 209  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  19515574 tgcttcttcgacaaagctgcatattttagtatttctggcctagagcccatgatttcttgtgcaacactttagtgattt-attcttggggctcaagtcaat 19515476  T
Q  210 gttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||| ||||||||||    
T  19515475 gttagactataaatagagcatccatctagtt 19515445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 1462347 - 1462569
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaaccctt-ttacccttttgctgctt 108  Q
    |||||||||||| ||| |||||| || |||||| ||||||| ||||||||||| |||||||||||   |||||||  ||| | |||||||||            
T  1462347 aatatgaagatcccatacaaaaaaatcttgtgcaaagaattagaagatcttgtacaaaaatataacaagtggcgcgccccatattacccttt-------- 1462438  T
Q  109 ttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaa 208  Q
     |||||||||||||||||   ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||    
T  1462439 -tgcttcttcgacaaagctttctattttagtatttctgacctagagcccatggttttttgtgcaacactttagtgatttaattcttggggctcaagtcaa 1462537  T
Q  209 tgttagactataaatagagcagccatctagtt 240  Q
    ||||||||||||||||||||||||| ||||||    
T  1462538 tgttagactataaatagagcagccaactagtt 1462569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 4460988 - 4460850
Alignment:
Q  99 tttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttgggg 198  Q
    |||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||| |||    
T  4460988 tttgctgcttttgcttctccgacaa-gctgcctattttagtatttctgaactagagcccatggtttcttgtgcaacactttagtgatttagttcttaggg 4460890  T
Q  199 ctcaagtcaatgttagactataaatagagcagccatctag 238  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4460889 ctcaagtcaatgttagactataaatagagcagtcatctag 4460850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 11484094 - 11483955
Alignment:
Q  95 cccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattctt 194  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||| ||||||| |||||||| |||||| | ||||| |||||||||||| |||||    
T  11484094 cccttttgctgctttttcttcttcgacaa-gctgcctattttagtatttttgacctaaagcccatgatttcttgtacaacactttagtgatttatttctt 11483996  T
Q  195 ggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
     ||| | |||||| ||||||||||||||||||||| |||||    
T  11483995 agggattaagtcattgttagactataaatagagcaaccatc 11483955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 9194308 - 9194198
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttacccttttgct 104  Q
    |||| |||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||     
T  9194308 ccaaaaatatgaagatctcatacaaaaatatcttgtgtaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcaccccttttacccttttgca 9194209  T
Q  105 gcttttgcttc 115  Q
    |||| ||||||    
T  9194208 gcttctgcttc 9194198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 48713246 - 48713357
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaa-atatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttacccttttgc 103  Q
    |||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||   ||||| |||| |||||||||||||||||    
T  48713246 ccaaaaatatgaagatctcatacaaaaaatatattgttcaaagaatttgaagatcttgtgcaaaaatataacaagtgccgcaccccttttacccttttgc 48713345  T
Q  104 tgcttttgcttc 115  Q
    ||||| ||||||    
T  48713346 tgcttctgcttc 48713357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 9004403 - 9004513
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgct 104  Q
    |||| |||||||||||||||| | ||||||| || ||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || ||||||||||||    
T  9004403 ccaaaaatatgaagatctcataccaaaatatcttatgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttttgct 9004502  T
Q  105 gcttttgcttc 115  Q
    |||||||||||    
T  9004503 gcttttgcttc 9004513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 14942023 - 14941919
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || |||||||||||||||||    
T  14942023 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttttgctgcttt 14941924  T
Q  110 tgctt 114  Q
    |||||    
T  14941923 tgctt 14941919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 15369616 - 15369512
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || |||||||||||||||||    
T  15369616 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttttgctgcttt 15369517  T
Q  110 tgctt 114  Q
    |||||    
T  15369516 tgctt 15369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 10204465 - 10204590
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || ||||||| |||||||||    
T  10204465 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttatgctgcttt 10204564  T
Q  110 tgcttcttcgacaaagccgcctatttt 136  Q
    |||||| | ||| |||| |||||||||    
T  10204565 tgcttcatagac-aagctgcctatttt 10204590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4313014 - 4313119
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata--agtggcgcaacccttt-tacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||  || |||||  ||| || |||||||||||||||||    
T  4313014 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatatacaagaggcgctccccattatacccttttgctgcttt 4313113  T
Q  110 tgcttc 115  Q
    ||||||    
T  4313114 tgcttc 4313119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 21005770 - 21005708
Alignment:
Q  15 tatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||    
T  21005770 tatgaagatctcatacaaaaatatcttgtgcaaagaatttgaagatctcgtacaaaaatataa 21005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 4256798 - 4256702
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    ||||| ||||||| ||||| | ||||||| ||||||| || ||||||||| ||||| | |||  ||||| ||||||| |||||||||||||||||||    
T  4256798 tatttttgacctaaagcccgtagtttcttgtgcaacacttcagtgatttatttcttagcgctttagtcattgttagattataaatagagcagccatc 4256702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 15707534 - 15707470
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||||    
T  15707534 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataa 15707470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 25181263 - 25181199
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||| ||||||| ||||||||| |||||  ||||||||||||||||||| ||| |||||||    
T  25181263 aatatgaatatctcatacaaaaatatcttgtgaaaagaatttgaagatcttgtacaataatataa 25181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 4307644 - 4307707
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  4307644 aatatgaatatctcatacaaaaatattatgtgcaaagaatttgaagatcttgtacaaatatata 4307707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 4983379 - 4983245
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    |||||||||| ||||||||||||||||| || |||| ||| |||  |||||||||||| ||||| ||||||||| || |||| | || |||| || ||||    
T  4983379 ccttttgctgtttttgcttcttcgacaa-gctgcctgttt-agtttatttctgacctaaagcccgtggtttcttgtggaacattatattgatgtatttct 4983282  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagc 231  Q
    ||||||| |||| | |  ||| ||||||||||||||||    
T  4983281 tggggcttaagt-agttgtagcctataaatagagcagc 4983245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 21005682 - 21005644
Alignment:
Q  202 aagtcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  21005682 aagtcaatgttagactataaatagagcaaccatctagtt 21005644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 4461065 - 4461012
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc 61  Q
    |||| ||||||||||||| || ||||||||| |||||| |||||||||||||||    
T  4461065 ccaaaaatatgaagatcttatacaaaaatatcttgtgcaaagaatttgaagatc 4461012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 16897580 - 16897519
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaata 74  Q
    |||||||| ||||||| |||||||||||||||| | ||||||||| ||||||| ||| ||||    
T  16897580 aatatgaatatctcatacaaaaatatattgtgcaaggaatttgaaaatcttgtacaataata 16897519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33609489 - 33609550
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaata 74  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| ||||    
T  33609489 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataata 33609550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 38877319 - 38877396
Alignment:
Q  153 agcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcag 230  Q
    ||||||||||||||| || |||| | || |||| |||||||||||||| |||| | | |||| |||||||||||||||    
T  38877319 agcccatggtttcttgtggaacattctattgatgtaattcttggggcttaagttagttttaggctataaatagagcag 38877396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 8880250 - 8880187
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| || |||||||||||||||| |||| |||||    
T  8880250 aatatgaatatctcatacaaaaatatcctgtgcaaaaaatttgaagatcttgtacaaacatata 8880187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 13434658 - 13434721
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||   |||| ||||||||||||||||||| |||| |||||    
T  13434658 aatatgaatatctcatacaaaaatattccgtgcaaagaatttgaagatcttgtacaaatatata 13434721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 16463519 - 16463456
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| |||||||||||||||||  | ||| ||||||||||||||||| | |||| |||||    
T  16463519 aatatgaatatctcatgcaaaaatatcctatgcaaagaatttgaagatcttctacaaatatata 16463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 649076 - 649018
Alignment:
Q  17 tgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat 75  Q
    |||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| ||||    
T  649076 tgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaacatat 649018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 9004359 - 9004396
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaaga 50  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  9004359 aatataaagatctcatgcaaaaatatattgtgcaaaga 9004396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 48713197 - 48713234
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgc 45  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  48713197 ccaaaaatataaagatctcatgcaaaaatatattgtgc 48713234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 9174 - 8935
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||  ||||||||||   ||||||| |||||||||||||||||||    
T  9174 ccaaaaatatgaagatctcatgcaaaaatctattgtgcaaagaatttgaacatcttgtcaaaaaatataacaagtggcgcgacccttttacccttttgct 9075  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  9074 g-ttttgcttcttcgacaaagctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacaatttagtgatttaattctttgggctcaag 8976  T
Q  205 tcaatgttagactataaatagagcagccatctagttgtaaa 245  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8975 tcaatgttagactataaatagagcagccatctagttgtaaa 8935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 9218 - 9190
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatatt 41  Q
    |||||||||||||||||||||||||||||    
T  9218 aatatgaagatctcatgcaaaaatatatt 9190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 26017686 - 26017921
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||    
T  26017686 ccaaaaatatgaagatctgatacaaaaatatcttgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcaccccttttacccttttgct 26017785  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  26017786 gcttttgtttcttcgacaaagctgcctattttagtatttcagacctagagcctatggtttctagtgcaacactttagtgatttaattcttggggctcaag 26017885  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||||| ||| |||||||||    
T  26017886 tcaatgttagactataaatagatcagtcatctagtt 26017921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 26157059 - 26157294
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||    
T  26157059 ccaaaaatatgaagatctgatacaaaaatatcttgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcaccccttttacccttttgct 26157158  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  26157159 gcttttgtttcttcgacaaagctgcctattttagtatttcagacctagagcctatggtttctagtgcaacactttagtgatttaattcttggggctcaag 26157258  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||||| ||| |||||||||    
T  26157259 tcaatgttagactataaatagatcagtcatctagtt 26157294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 5399005 - 5399239
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| |||||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||||   |||| |   ||||||| ||||||||||    
T  5399005 ccaaaaatatgaagatctcatgcaaaaatatcttgtgcaaataatttgaagatcttgtacaaaaatataacaagtgg-gtgccccttttgcccttttgct 5399103  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  5399104 gcttttgcttcttggacaaagctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtgatttaattcttggggctcaag 5399203  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
     |||||||||||||||||||||||||||||||||||    
T  5399204 ccaatgttagactataaatagagcagccatctagtt 5399239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 25507370 - 25507605
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||   ||||| |  | ||||||||||||||||    
T  25507370 ccaaaaatatgaagatatcatagaaaaatatattgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcacgcctcttttacccttttgct 25507469  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||| |||||||||||    
T  25507470 gcatttgcttcttcgacaaagctgcctattttagtatttctgacctagaacccatggcttcttgtgcaacactttagtgatttaattcatggggctcaag 25507569  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||||||||| |||||||||    
T  25507570 tcaatgttagactataaatagagcagtcatctagtt 25507605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 26138440 - 26138661
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgct 104  Q
    |||| ||||||||||||| || ||||||||| |||||| || ||||||||||||||||||||||||||||   ||||||   ||||||||||||||||||    
T  26138440 ccaaaaatatgaagatctgatacaaaaatatcttgtgcaaataatttgaagatcttgtgcaaaaatataacaagtggcgggccccttttacccttttgct 26138539  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||    
T  26138540 gcttttgcttcttcgacaaagctgcctattttagtatttcagacctagagcctatggtttcttgtgcaacactttagtgatttaattcttagggctcaag 26138639  T
Q  205 tcaatgttagactataaataga 226  Q
    ||||||||||||||||||||||    
T  26138640 tcaatgttagactataaataga 26138661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 17739399 - 17739634
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata--agtggcgcaaccctt-ttacccttttgct 104  Q
    |||| |||||||||||||||| ||||||||| |||||| ||||| ||||||||||||| |  |||||||  |  |||||  ||| | || ||||||||||    
T  17739399 ccaaaaatatgaagatctcatacaaaaatatcttgtgcaaagaaattgaagatcttgtaccgaaatatagcataggcgcgccccatatttcccttttgct 17739498  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggttt-cttatgcaacaatttagtgatttaattcttggggctcaa 203  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17739499 gcttttgcctcttcgacaa-gctgcctattttagtatttctgacctagagcccatggttttcttgtgcaacaatttagtgatttaattcttggggctcaa 17739597  T
Q  204 gtcaatgttagactataaatagagcagccatctagtt 240  Q
    ||||||||||||||||||||| |||||  ||||||||    
T  17739598 gtcaatgttagactataaataaagcagttatctagtt 17739634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 29253766 - 29253986
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaacccttttacccttttgctgctttt 110  Q
    |||||||||||||||| | ||||||| |||||| ||||||||||||||||||| ||| |||||  |||||||||  | | |||  ||||||        |    
T  29253766 aatatgaagatctcataccaaaatatcttgtgcaaagaatttgaagatcttgtacaataatatgaaagtggcgcgccacattttacctttt--------t 29253857  T
Q  111 gcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatg 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  29253858 gcttcttcgacaaagctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtgattt-attcttggggctcaagtcaatg 29253956  T
Q  211 ttagactataaatagagcagccatctagtt 240  Q
    ||| ||||||||||||||||||||| ||||    
T  29253957 ttaaactataaatagagcagccatcgagtt 29253986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 18396729 - 18396590
Alignment:
Q  98 ttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggg 197  Q
    ||||||||||||||| |||||||||  || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||    
T  18396729 ttttgctgcttttgcctcttcgacag-gctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtgatttatttcttagg 18396631  T
Q  198 gctcaagtcaatgttagactataaatagagcagccatctag 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18396630 gctcaagtcaatgttagactataaatagagcagccatctag 18396590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 12660694 - 12660554
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttg 195  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||     
T  12660694 ccttttgctgcttttgcttcttcgacaa-gctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtga-ttatttctta 12660597  T
Q  196 gggctcaagtcaatgttagactataaatagagcagccatctag 238  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  12660596 gggctcaagtcaatgttagactataaatagagcaaccatctag 12660554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 12658254 - 12658119
Alignment:
Q  102 gctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctc 201  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||    
T  12658254 gctgcttttgcttcttcgacaa-gctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtgatttatttcttagggctc 12658156  T
Q  202 aagtcaatgttagactataaatagagcagccatctag 238  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  12658155 aagtcaatgttagaccataaatagagtagccatctag 12658119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 23517561 - 23517428
Alignment:
Q  106 cttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagt 205  Q
    |||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  23517561 cttttgcttcttcgacaa-gctgcctattttagtatttctgaactagagcccatgttttcttgtgcaacactttagtgatttaattcttggggctcaagt 23517463  T
Q  206 caatgttagactataaatagagcagccatctagtt 240  Q
    ||||||||||| |||||||||||| ||||||||||    
T  23517462 caatgttagacaataaatagagcaaccatctagtt 23517428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 23574886 - 23574753
Alignment:
Q  106 cttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagt 205  Q
    |||||||||||||||||| ||  |||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||    
T  23574886 cttttgcttcttcgacaa-gcttcctattttagtatttctgacctcgagcccatgttttcttgtgcaacactttagtgatttaattcttggggcttaagt 23574788  T
Q  206 caatgttagactataaatagagcagccatctagtt 240  Q
    ||||||| ||||||||||||||||||| |||||||    
T  23574787 caatgttggactataaatagagcagccctctagtt 23574753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 23524130 - 23524029
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatctag 238  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||||    
T  23524130 tatttctgacctagagcccatgttttcttgtgcaacactttagtgatttaattcttagggctcaagtcaatgttaaacaataaatagagcaaccatctag 23524031  T
Q  239 tt 240  Q
    ||    
T  23524030 tt 23524029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 13217530 - 13217402
Alignment:
Q  106 cttttgcttcttcgacaaagccgcctatttta-gtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    |||||||||||||||||| |  |||| ||||  |||||||||||||| ||||||  ||||||| ||||| |||||||||||||| ||||| ||||| |||    
T  13217530 cttttgcttcttcgacaa-gttgcctgttttgtgtatttctgacctaaagcccagagtttcttgtgcaa-aatttagtgatttatttcttagggcttaag 13217433  T
Q  205 tcaatgttagactataaatagagcagccatc 235  Q
    ||| |||||||||||||||||||||||||||    
T  13217432 tcattgttagactataaatagagcagccatc 13217402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 25031402 - 25031306
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    ||||| ||||||| ||||| ||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||| |||||    
T  25031402 tatttttgacctaaagcccgtggtttcttgtgcaacactttagtgatttatttcttagggcttaagtcaatgttggactataaatagagcaaccatc 25031306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 28734324 - 28734229
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccat 234  Q
    ||||| ||||||| ||| | ||||||||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  28734324 tatttttgacctaaagctcgtggtttcttgtgcaacactttagtgatttatttcttagggcttaagtcattgttagactataaatagagcagccat 28734229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 23574978 - 23574910
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||| ||||||||||||| || ||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  23574978 ccaaaaatatgaagatcttatacaaaaatatcttgtgcaaagaatttgaagatcttgtaccaaaatata 23574910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 23517648 - 23517585
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    ||||||||||||| || ||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  23517648 aatatgaagatcttatacaaaaatattttgtgcaaagaatttgaagatcttgtaccaaaatata 23517585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 17284353 - 17284234
Alignment:
Q  19 aagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttttgcttc 115  Q
    ||||||| || ||||||||| | |||| ||||||||||||||||||| ||  |||||  |||||||||  ||| || |||||||||||||||||||||||    
T  17284353 aagatcttatacaaaaatatctggtgcaaagaatttgaagatcttgtacattaatatcaaagtggcgcgccccattatacccttttgctgcttttgcttc 17284254  T
Q  116 ttcgacaaagccgcctatttt 136  Q
     | ||| |||| |||||||||    
T  17284253 atagac-aagctgcctatttt 17284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25949099 - 25949162
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  25949099 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 25949162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25963699 - 25963762
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||||| |||| |||| |||||    
T  25963699 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatattgtacaaatatata 25963762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25968346 - 25968409
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||||| |||| |||| |||||    
T  25968346 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatattgtacaaatatata 25968409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 32543034 - 32543097
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  32543034 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 32543097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 5949951 - 5949881
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaa-atatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||| |||||||||||||||| | ||| |||| |||||| ||||||||||||||||||| ||| |||||||    
T  5949951 ccaaaaatatgaagatctcataccaaatatatcttgtgcaaagaatttgaagatcttgtacaataatataa 5949881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 18234142 - 18234089
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc 61  Q
    |||| |||| ||||||||||| ||||||||| |||||| |||||||||||||||    
T  18234142 ccaaaaatacgaagatctcatacaaaaatatcttgtgcaaagaatttgaagatc 18234089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 3923554 - 3923642
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccat 234  Q
    ||||| ||||||| ||||| ||||||||| ||||||| |||||||||||| |||||  |||| |||||      ||||||||||||||||||||||    
T  3923554 tatttttgacctaaagcccgtggtttcttgtgcaacactttagtgatttatttctt-aggcttaagtc------agactataaatagagcagccat 3923642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 18993097 - 18993185
Alignment:
Q  139 tatttctgacctaga-gcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagag 227  Q
    ||||||||||||| | |||||||||||||| || |||| | ||||||| || ||||| ||||| |||||| || || |||||||||||||    
T  18993097 tatttctgacctaaaagcccatggtttcttgtggaacattctagtgatatatttcttagggcttaagtcattg-taaactataaatagag 18993185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 19612966 - 19612856
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    ||||||| || |||||||||||  |||| ||| ||||||| |||  |||||||||||| ||||||||||||||| || |||| | || |||| || |||     
T  19612966 ccttttgatgtttttgcttcttgtacaa-gccacctatttcagtttatttctgacctaaagcccatggtttcttgtggaacattctattgatatatttca 19612868  T
Q  194 tggggctcaagt 205  Q
    ||||||| ||||    
T  19612867 tggggcttaagt 19612856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 24393106 - 24393070
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgccta 132  Q
    |||||| |||||||||||||||||||||||| |||||    
T  24393106 ccttttactgcttttgcttcttcgacaaagctgccta 24393070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 49665 - 49895
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgctgcttt 109  Q
    |||||||||||||||| | ||||||| |||||| ||||||||||||||||||| |||||||||||   |||||||  || |||| |||||||||||||||    
T  49665 aatatgaagatctcatacgaaaatatcttgtgcaaagaatttgaagatcttgtacaaaaatataacaagtggcgcgccctttttgcccttttgctgcttt 49764  T
Q  110 tgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaat 209  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  49765 tgcttcttcgacatagctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtgatttaattcttggggttcaagtcaat 49864  T
Q  210 gttagactataaatagagcagccatctagtt 240  Q
    ||||||||||||||||||||| |||||||||    
T  49865 gttagactataaatagagcagtcatctagtt 49895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 49611 - 49648
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgc 45  Q
    |||| |||||||||||||||||||||||||||||||||    
T  49611 ccaaaaatatgaagatctcatgcaaaaatatattgtgc 49648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 20104245 - 20104010
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaaccctt-ttacccttttgc 103  Q
    |||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||| | |||||||||||   |||||||  ||| | |||||||| |||    
T  20104245 ccaaaaatatgaagatctcatacaaaaatatcttgtgcaaagaatttgaagatcttatacaaaaatataacaagtggcgcgccccatattacccttctgc 20104146  T
Q  104 tgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaa 203  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||    
T  20104145 tgcttttgcttatttgacaaagctgcctattttagtatttctgacctagagcctatggtttcttgtgcaacactttagtgatttaattcttggggctcaa 20104046  T
Q  204 gtcaatgttagactataaatagagcagccatctagt 239  Q
    |||||||| |||||||||||||||||||||||||||    
T  20104045 gtcaatgtaagactataaatagagcagccatctagt 20104010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 20738121 - 20738355
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata--agtggcgcaaccc-ttttacccttttgct 104  Q
    |||| ||||| |||||||||| ||||||||| |||||| ||||| ||||||||||||| ||| ||||||  |  | |||| ||| |||| ||||||||||    
T  20738121 ccaaaaatataaagatctcatacaaaaatatcttgtgcaaagaaattgaagatcttgtacaagaatatagcatagacgcacccccttttgcccttttgct 20738220  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  20738221 gcttttgcttcttcgacaa-gctgcctattttagtatttctgacctagagcacatggtttcttgtgcaacactttagtgatttaattcttggggctcaag 20738319  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||| |||||||||||||||    
T  20738320 tcaatgttagactataaataaagcagccatctagtt 20738355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 2953854 - 2953620
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata--agtggcgcaaccc-ttttacccttttgct 104  Q
    |||| |||||||||||||||| ||||||||| |||||| ||||| ||||||||||||| | | ||||||  |  |||||| ||| |||| ||||||||||    
T  2953854 ccaaaaatatgaagatctcatacaaaaatatcttgtgcaaagaaattgaagatcttgtaccagaatatagcataggcgcaccccattttgcccttttgct 2953755  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    |||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||||| ||||||||||||    
T  2953754 gcttttgcttctccgacaa-gctgcctattttagtatttctgacctagagcccatcgtttcttgtgcaacactttaatgatttaattattggggctcaag 2953656  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2953655 tcaatgttagactataaatagagtagccatctagtt 2953620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 16676983 - 16677079
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    ||||||||||||| |||||||| |||||| ||||||| || ||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  16676983 tatttctgacctaaagcccatgatttcttgtgcaacacttcagtgatttatttcttagggcttaagtcaatgttaggctataaatagagcagccatc 16677079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 12410430 - 12410517
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagag 227  Q
    ||||||||||||| ||||||||||||||| || |||| | |||||||||| ||||| ||||| |||||| || || |||||||||||||    
T  12410430 tatttctgacctaaagcccatggtttcttgtggaacattctagtgatttatttcttagggcttaagtcattg-taaactataaatagag 12410517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 23343836 - 23343733
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaacccttttacccttttgctgctttt 110  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  ||||||| |  || || ||||||||||||| ||||    
T  23343836 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcacgcccattatacccttttgctgttttt 23343737  T
Q  111 gctt 114  Q
    ||||    
T  23343736 gctt 23343733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 20967544 - 20967648
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaa--atataagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| || | || ||||||||| || ||| ||||||||||||||||||| |||||  ||| |||||||||  ||| || |||||||||||||||||    
T  20967544 aatatgaatatgttatacaaaaatatcttatgcaaagaatttgaagatcttgtacaaaaacataaaagtggcgcgccccattatacccttttgctgcttt 20967643  T
Q  110 tgctt 114  Q
    |||||    
T  20967644 tgctt 20967648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 15059229 - 15059293
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||||    
T  15059229 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataa 15059293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 21273415 - 21273525
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgct 104  Q
    |||| |||||||||||||||| | || |||| |||||  ||||||||||| ||||||  ||| |||||  |||||||||  ||| || |||| |||||||    
T  21273415 ccaaaaatatgaagatctcataccaatatatgttgtgtaaagaatttgaatatcttgcacaataatataaaagtggcgcgccccattatacctttttgct 21273514  T
Q  105 gcttttgcttc 115  Q
    |||||||||||    
T  21273515 gcttttgcttc 21273525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 21273371 - 21273408
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaaga 50  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  21273371 aatataaagatctcatgcaaaaatatattgtgcaaaga 21273408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 25486048 - 25486011
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgc 45  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  25486048 ccaaaaatataaagatctcatgcaaaaatatattgtgc 25486011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 20225497 - 20225344
Alignment:
Q  87 cccttttacccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatt 186  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  20225497 cccttttacccttttgctgcttttgcttcttcgacaaagctgcctattttagtatttctgacctagagcccatggtttcttgtgcaacactttagtgatt 20225398  T
Q  187 taattcttggggctcaagtcaatgttagactataaatagagcagccatctagtt 240  Q
    | |||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  20225397 tcattcttagggttcaagtcaatgttagactataaatagagcagccatgtagtt 20225344  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 17023106 - 17023248
Alignment:
Q  106 cttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagt 205  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  17023106 cttttgcttattcgacaa-gctgcctattttagtatttctgacctagagcc-atggtttcttgtgcaacactttagtgatttaattcttggggctcaagt 17023203  T
Q  206 caatgttagactataaatagagcagccatctag-ttgtaaaccca 249  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  17023204 caatgttagactataaatagagcagccatctagtttgtaaaccca 17023248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 13069632 - 13069773
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttg 195  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||  ||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  13069632 ccttttgctgcttttgcttcttcgacaa-gcttcctattttagtattcatgacctagaacccatggtttcttgtgcaacactttagtgatttaattcttg 13069730  T
Q  196 gggctcaagtcaatgttagactataaatagagcagccatctag 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  13069731 gggctcaagtcaatgttagactataaaaagagcagccatctag 13069773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 22038747 - 22038870
Alignment:
Q  106 cttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagt 205  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||           |||||||||||||||||||||||    
T  22038747 cttttgcttcttcgacaaagctgcctatttttgtatttctgacctagagtccatggtttcttgtgc-----------gatttaattcttggggctcaagt 22038835  T
Q  206 caatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||||| || |||||||||    
T  22038836 caatgttagactataaatagagtagtcatctagtt 22038870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 13601524 - 13601613
Alignment:
Q  30 caaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttacccttttgctgcttttgcttct 116  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||   |||||||||  |||||||||||||||| ||||| |||||||    
T  13601524 caaaaatatcttgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcgccccttttacccttttgttgcttctgcttct 13601613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 14495110 - 14495006
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||||||||  |||||||||  ||| || |||||||||||||||||    
T  14495110 aatatgaatatctcatacaaaaatatcctgtgcaaagaatttgaagatcttgtacaaaaatataaaagtggcgcgccccattatacccttttgctgcttt 14495011  T
Q  110 tgctt 114  Q
    |||||    
T  14495010 tgctt 14495006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 14661078 - 14660974
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||| ||||||||||||||||||||| ||| |||||  |||||||||  ||| || |||||||||||||||||    
T  14661078 aatatgaatatctcatacaaaaatatcatgtacgaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttttgctgcttt 14660979  T
Q  110 tgctt 114  Q
    |||||    
T  14660978 tgctt 14660974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 22038655 - 22038723
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||| |||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||| |||||||||||    
T  22038655 ccaaaaatatgaa-atctcatacaaaaatatcttgtgcaaagaatttggagatcttgtacaaaaatataa 22038723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 34053932 - 34053879
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc 61  Q
    |||| |||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  34053932 ccaaaaatatgaagatctcatacaaaaatatcttgtgcaaagaatttgaagatc 34053879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 11398665 - 11398728
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  11398665 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 11398728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25054811 - 25054874
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  25054811 aatatgaatatctcatacaaaaatattatgtgcaaagaatttgaagatcttgtacaaatatata 25054874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 36075971 - 36076034
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  36075971 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 36076034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 19567318 - 19567208
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaac-ccttttacccttttgct 104  Q
    |||| ||||| ||||||| || | ||||||| |||||| ||||||| ||||||||||| ||| |||||  |||||| ||  | | || ||||||||||||    
T  19567318 ccaaaaatattaagatctgataccaaaatatcttgtgcaaagaattcgaagatcttgtacaataatataaaagtggtgcgcctcattatacccttttgct 19567219  T
Q  105 gcttttgcttc 115  Q
    |||||||||||    
T  19567218 gcttttgcttc 19567208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 3245346 - 3245284
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat 75  Q
    |||||||| ||||||| |||||||||  | ||| ||||||||||||||||||| |||| ||||    
T  3245346 aatatgaatatctcatacaaaaatatcatatgcaaagaatttgaagatcttgtacaaatatat 3245284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 25766060 - 25766018
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaaga 50  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  25766060 ccaaaaatataaagatctcatgcaaaaatatattgtgcaaaga 25766018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 17023013 - 17023070
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgt 65  Q
    |||| |||| ||||||||||  ||||||||| |||||| ||||||| |||||||||||    
T  17023013 ccaaaaataagaagatctcacacaaaaatatcttgtgcaaagaattagaagatcttgt 17023070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 22699 - 22486
Alignment:
Q  30 caaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgctgcttttgcttcttcgacaaagc 126  Q
    ||||||||| |||||| |||||||||||||| |||| |||||||||||   ||| |||  || |||| ||||||||||| |||||| |||||||||||||    
T  22699 caaaaatatcttgtgcaaagaatttgaagatattgtacaaaaatataacaagtgacgcgcccattttgcccttttgctgtttttgcctcttcgacaaagc 22600  T
Q  127 cgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaataga 226  Q
      |||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22599 tacctattttagtatttctgacctagagtccatgatttcttgtgcaacactttagtgatataattcttggggttcaagtcaatgttagactataaataga 22500  T
Q  227 gcagccatctagtt 240  Q
    ||| ||||||||||    
T  22499 gcaaccatctagtt 22486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 26853930 - 26854073
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttg 195  Q
    |||||||| ||||||||||||||||||| || || |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  26853930 ccttttgcagcttttgcttcttcgacaa-gctgcgtattttagtatttctgacctagagcccatgttttcttgtgcaacactttagtgatttaattcttg 26854028  T
Q  196 gggctcaagtcaatgttagactataaatagagcagccatctagtt 240  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  26854029 gggctcaagtcaatgttagactatagatagagcagccatctagtt 26854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 21319289 - 21319422
Alignment:
Q  106 cttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagt 205  Q
    |||||||||||||||||| || | |||||||||||||||| || ||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  21319289 cttttgcttcttcgacaa-gctggctattttagtatttcttacttagagtccatggtttcttgtgcaacactttagtgatttaattcttggggctgaagt 21319387  T
Q  206 caatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||| ||||||||||||||||||||    
T  21319388 caatgttagactattaatagagcagccatctagtt 21319422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 10061 - 9973
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttaccct 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||| |||||||||||||    
T  10061 aatatgaagatctcatgcaaaaatatattgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcgacccttttaccct 9973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 24341824 - 24342056
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc-ttgtgcaaaaatataag--tggcgcaaccctt-ttacccttttgc 103  Q
    |||| ||||||||||||| || ||||||||| |||||| || | |||||||||| ||   |||||||| |||  ||||||  ||| | || |||||||||    
T  24341824 ccaaaaatatgaagatcttatacaaaaatatcttgtgcaaaaagtttgaagatccttcaccaaaaatagaagcatggcgcgccccatattgcccttttgc 24341923  T
Q  104 tgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctc 201  Q
     ||||||||||||  ||||| |  | || |||||||  |||||||||||| |||| ||||| |||| ||||||| |||||||||||| ||||| |||||     
T  24341924 ggcttttgcttctatgacaa-gatgtctgttttagtttatttctgacctaaagcctatggtgtcttgtgcaacactttagtgatttatttcttagggctt 24342022  T
Q  202 aagtcaatgttagactataaatagagcagccatc 235  Q
    ||||||||||||| ||||||||||||||| ||||    
T  24342023 aagtcaatgttaggctataaatagagcagtcatc 24342056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14351936 - 14351827
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgct 104  Q
    |||| |||||||||||||||| | ||||||| |||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || ||||||||||||    
T  14351936 ccaaaaatatgaagatctcataccaaaatatcttgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttttgct 14351837  T
Q  105 gcttttgctt 114  Q
    ||||||||||    
T  14351836 gcttttgctt 14351827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 18161796 - 18161899
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaacccttttacccttttgctgctttt 110  Q
    |||||||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||| |||||  |||||||||  || || |||| |||||||||||||    
T  18161796 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgcccattataccattttgctgctttt 18161895  T
Q  111 gctt 114  Q
    ||||    
T  18161896 gctt 18161899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 24967058 - 24967163
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    ||||||||||| |||| | ||||||| |||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || |||||||||||||||||    
T  24967058 aatatgaagatatcatactaaaatatcttgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattatacccttttgctgcttt 24967157  T
Q  110 tgcttc 115  Q
    ||||||    
T  24967158 tgcttc 24967163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 19792393 - 19792320
Alignment:
Q  162 tttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    |||||| ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||||||||||| ||||    
T  19792393 tttcttgtgcaacactttagtgatttatttcttagggcttaagtcattgttagactataaatagagcagacatc 19792320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 24221778 - 24221647
Alignment:
Q  99 tttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttgg 196  Q
    ||||||||||||||||| | ||  |||| |||| |||||||  |||||||||||| ||||||||||||||| || |||| | || ||||  | ||||| |    
T  24221778 tttgctgcttttgcttcct-gatcaagctgccttttttagtttatttctgacctaaagcccatggtttcttgtggaacattctattgatggatttcttag 24221680  T
Q  197 ggctcaagtcaatgttagactataaatagagca 229  Q
    |||| |||| | | |||||||||||||||||||    
T  24221679 ggcttaagttagttttagactataaatagagca 24221647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 10100 - 10035
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||| |||||||||||||||||||||||||||||||||    ||| |||||||||  ||||||||||||    
T  10100 ccaaaaatatgaagatctcatgcaaaaatatattgtgc---aaatatgaagatctcatgcaaaaatata 10035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 21319207 - 21319264
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgt 65  Q
    |||| |||||||||||||||| ||||||||| |||||| ||||| || ||||| ||||    
T  21319207 ccaaaaatatgaagatctcatacaaaaatatcttgtgcaaagaaattaaagatgttgt 21319264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 38651915 - 38652149
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata--agtggcgcaaccctt-ttacccttttgct 104  Q
    |||| ||||| ||||||| || ||||||||| |||||| ||||||| ||||||||||||| ||||||||  |  |||||  ||| | || |||||||| |    
T  38651915 ccaaaaatattaagatcttatacaaaaatatcttgtgcaaagaattggaagatcttgtgccaaaatatagcataggcgcgccccatattgcccttttgtt 38652014  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    ||||||||||||||||||| || || ||||||||||||| | | |||||||||||| |||||| ||||||| ||||||| ||||| ||||||||||||||    
T  38652015 gcttttgcttcttcgacaa-gctgcttattttagtatttttaaactagagcccatgttttcttgtgcaacactttagtgttttaaatcttggggctcaag 38652113  T
Q  205 tcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||||||||||||||||| |||||||||    
T  38652114 tcaatgttagactataaatagagcagtcatctagtt 38652149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 11922679 - 11922539
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    |||||||||  ||||||||||||||||| ||  |||||||||||  |||||||||||| ||||| ||||||||| ||||||| ||||||||| || ||||    
T  11922679 ccttttgctatttttgcttcttcgacaa-gctacctattttagtttatttctgacctaaagcccttggtttcttgtgcaacactttagtgatctatttct 11922581  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    | ||||| |||||| |||||| |||||||||||| |||||||    
T  11922580 tagggcttaagtcattgttaggctataaatagagtagccatc 11922539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 5513868 - 5513735
Alignment:
Q  97 cttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattctt 194  Q
    ||||||||||||||||||||||||||| || | || ||| |||  |||||||||||| |||||||||||||||||| |||| | || |||| ||||||||    
T  5513868 cttttgctgcttttgcttcttcgacaa-gctgtctgttt-agtttatttctgacctaaagcccatggtttcttatggaacattctattgatgtaattctt 5513771  T
Q  195 ggggctcaagtcaatgttagactataaatagagcagc 231  Q
    |||||| |||| | | |||||||||||||| ||||||    
T  5513770 ggggcttaagt-agttttagactataaataaagcagc 5513735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 10730923 - 10731032
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttacccttttgct 104  Q
    |||| |||||||||||||||| ||||||||| || ||| |||||||| ||||||||||||||||||||   ||||||||   |||||||| |||||||||    
T  10730923 ccaaaaatatgaagatctcatacaaaaatatcttatgcaaagaatttaaagatcttgtgcaaaaatataacaagtggcgtgcccctttta-ccttttgct 10731021  T
Q  105 gcttttgcttc 115  Q
    |||| ||||||    
T  10731022 gcttctgcttc 10731032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 10944692 - 10944801
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttacccttttgct 104  Q
    |||| |||||||||||||||| ||||||||| || ||| |||||||| ||||||||||||||||||||   ||||||||   |||||||| |||||||||    
T  10944692 ccaaaaatatgaagatctcatacaaaaatatcttatgcaaagaatttaaagatcttgtgcaaaaatataacaagtggcgtgcccctttta-ccttttgct 10944790  T
Q  105 gcttttgcttc 115  Q
    |||| ||||||    
T  10944791 gcttctgcttc 10944801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 12346180 - 12346040
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    ||||||||| ||||||||||||| |||| || | || ||| |||  |||||||||||| ||||||||||||||| || |||| | |||| ||||| ||||    
T  12346180 ccttttgctacttttgcttcttctacaa-gctgtctgtttaagtttatttctgacctaaagcccatggtttcttgtgtaacactgtagtaatttatttct 12346082  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagccatc 235  Q
    | ||||| || ||||| || | ||||||||||||||||||||    
T  12346081 tagggcttaaatcaatatttggctataaatagagcagccatc 12346040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 24125515 - 24125411
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || |||||||||||||||||    
T  24125515 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccgttatacccttttgctgcttt 24125416  T
Q  110 tgctt 114  Q
    |||||    
T  24125415 tgctt 24125411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 21275028 - 21275132
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||    ||| || |||||||||||||||||    
T  21275028 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgttcaataatataaaagtggcatgccccattatacccttttgctgcttt 21275127  T
Q  110 tgctt 114  Q
    |||||    
T  21275128 tgctt 21275132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 3772499 - 3772439
Alignment:
Q  14 atatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaata 74  Q
    ||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| ||| ||||    
T  3772499 atatgaatatctcatacaaaaatataatgtgcaaagaatttgaagatcttgtacaataata 3772439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 11902919 - 11902867
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgt 65  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||||||||||    
T  11902919 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatcttgt 11902867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 45233990 - 45233926
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||||    
T  45233990 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataa 45233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 31593668 - 31593731
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  31593668 aatatgaatatctcatacaaaaatattctgtgcaaagaatttgaagatcttgtacaaatatata 31593731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 15409827 - 15409931
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa--gtggcgcaacccttt-tacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| |||| |||||||||||||| ||| |||||||  ||||| |  ||| || |||||||||| ||||||    
T  15409827 aatatgaatatctcatacaaaaatatcatgtgcaaagagtttgaagatcttgtacaataatataaaagtggcacgccccattatacccttttgttgcttt 15409926  T
Q  110 tgctt 114  Q
    |||||    
T  15409927 tgctt 15409931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 33331228 - 33331118
Alignment:
Q  95 cccttttgctgcttttgcttcttcgacaaagccgcctattttag--tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattc 192  Q
    |||||||||||||||| |||||||||| |||| ||||| |||||  ||||| ||||||| ||||||| ||||||| || |||| | || |||| || |||    
T  33331228 cccttttgctgcttttacttcttcgac-aagctgccta-tttagtttatttatgacctaaagcccatagtttcttgtggaacattctactgatgtatttc 33331131  T
Q  193 ttggggctcaagt 205  Q
    |||||||| ||||    
T  33331130 ttggggcttaagt 33331118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 45244559 - 45244498
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaata 74  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| ||||    
T  45244559 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataata 45244498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 23793768 - 23793690
Alignment:
Q  153 agcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagc 231  Q
    ||||||||||||||| || |||| | || |||| || ||||||||||| |||| | | |||| ||||||||||||||||    
T  23793768 agcccatggtttcttgtggaacattctattgatgtatttcttggggcttaagttagttttaggctataaatagagcagc 23793690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 11889302 - 11889249
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc 61  Q
    |||| |||||||||||||||| | ||||||| || ||| |||||||||||||||    
T  11889302 ccaaaaatatgaagatctcataccaaaatatcttctgcaaagaatttgaagatc 11889249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 9487270 - 9487138
Alignment:
Q  97 cttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattctt 194  Q
    |||||||||||||| ||||| |||||| || |||||||| |||  |||||| ||||| ||||| | ||||||| || |||| | || |||| || |||||    
T  9487270 cttttgctgcttttacttctccgacaa-gctgcctattt-agtctatttctaacctaaagcccgtagtttcttgtggaacactctattgatgtatttctt 9487173  T
Q  195 ggggctcaagtcaatgttagactataaatagagcag 230  Q
    |||||| ||||   ||| ||||||||||||||||||    
T  9487172 ggggcttaagtagttgt-agactataaatagagcag 9487138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 6930 - 6783
Alignment:
Q  95 cccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattctt 194  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||| |||||||||||    
T  6930 cccttttgctgcttttgcttcttcgacaaagctgcctattttagtatttcagacctagagcctatggtttcttgtgcaacactttagtaatttaattctt 6831  T
Q  195 ggggctcaagtc--aatgttagactataaatagagcagccatctagtt 240  Q
    |||||| |||||  |||||||||||||||||||| ||| |||||||||    
T  6830 ggggctgaagtcaaaatgttagactataaatagatcagtcatctagtt 6783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 25337474 - 25337243
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataag--tggcgcaaccctt-ttacccttttgct 104  Q
    |||| ||||||||||||| || ||||||||||||||||  | | |||||||||| |   | ||||||||||  |||||   ||||| ||  |||||||||    
T  25337474 ccaaaaatatgaagatcttatacaaaaatatattgtgcataaagtttgaagatccttcaccaaaatataagcatggcgtgccccttattgtccttttgct 25337375  T
Q  105 gcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaag 204  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||  |||| |||||||||    
T  25337374 gcttttgcttcttcgacaa-gctgcctattttagtatttctgacctagagcccatggtttcttgtgca-cactttagtgatttatatcttagggctcaag 25337277  T
Q  205 tcaatgttagactataaatagagcagccatctag 238  Q
    |||||||||| ||||||||||||||||| |||||    
T  25337276 tcaatgttagtctataaatagagcagccttctag 25337243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 25858907 - 25858726
Alignment:
Q  57 agatcttgtgcaaaaatataa---gtggcgcaacccttttacccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctaga 153  Q
    ||||||||| |||||||||||   |||||||  |||| ||  |||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  25858907 agatcttgtacaaaaatataacaagtggcgcgcccctattgtccttttgctgattttgattctacgacaaagctgcctattttagtatttctgacctaga 25858808  T
Q  154 gcccatggtttcttatgca-----acaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcag 230  Q
    |||||||||||||| ||||     ||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  25858807 gcccatggtttcttgtgcaacactacactatagcgatttaattcttggggatcaagtcaatgttagactataaatagagcag 25858726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 24366463 - 24366379
Alignment:
Q  156 ccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24366463 ccatggtttcttgtgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagtcatctagtt 24366379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 15583668 - 15583804
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    ||||||||||||||||||||||| |||| || ||||||||||||  |||||||||||| ||||||||||||||| ||||||| || ||||||||| ||||    
T  15583668 ccttttgctgcttttgcttcttcaacaa-gctgcctattttagtttatttctgacctaaagcccatggtttcttgtgcaacacttcagtgatttatttct 15583766  T
Q  194 tggggctcaagtcaatgttagactataaatagagcagc 231  Q
    | ||| | |||||| |||||||||||||||||||||||    
T  15583767 tagggtttaagtcattgttagactataaatagagcagc 15583804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 24369186 - 24369102
Alignment:
Q  156 ccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagccatctagtt 240  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24369186 ccatggtttcttgtgcaacaatttaatgatttaattcttggggctcaagtcaatgttagactataaatagagcagtcatctagtt 24369102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 25481174 - 25481278
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaac-ccttttacccttttgctgcttt 109  Q
    |||||||| ||||||| ||||||||| |||||| ||||||||||||||||||| |||||||||  |||||| ||  | | || |||||||||||||||||    
T  25481174 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatcttgtacaaaaatataaaagtggtgcgcctcattatacccttttgctgcttt 25481273  T
Q  110 tgctt 114  Q
    |||||    
T  25481274 tgctt 25481278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 25488780 - 25488884
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaac-ccttttacccttttgctgcttt 109  Q
    |||||||| ||||||| ||||||||| |||||| ||||||||||||||||||| |||||||||  |||||| ||  | | || |||||||||||||||||    
T  25488780 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatcttgtacaaaaatataaaagtggtgcgcctcattatacccttttgctgcttt 25488879  T
Q  110 tgctt 114  Q
    |||||    
T  25488880 tgctt 25488884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 44998003 - 44998072
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||| |||||||||||||||| | ||||||| |||||| ||||||||||||||||||| ||| |||||||    
T  44998003 ccaaaaatatgaagatctcataccaaaatatcttgtgcaaagaatttgaagatcttgtacaataatataa 44998072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 24507107 - 24507171
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||| |||||||    
T  24507107 aatatgaatatctcatacaaaaatatcttgtgcaaagaatttgaagatcttgtacaataatataa 24507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 32441701 - 32441634
Alignment:
Q  9 caagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    ||||||||| || ||||||| ||||||||| |||||| ||||||||||||||||||| |||| |||||    
T  32441701 caagaatataaatatctcatacaaaaatatcttgtgcaaagaatttgaagatcttgtacaaatatata 32441634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 29568791 - 29568738
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc 61  Q
    |||| |||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  29568791 ccaaaaatatgaagatctcatacaaaaatatcttgtgcaaagaatttgaagatc 29568738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 23140280 - 23140169
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaat--ataagtggcgcaaccc-ttttacccttttgct 104  Q
    |||| ||||||||||||||||   ||||||| |||||| ||||||| ||||||||||| ||| |||  | |||||||||  ||| || ||||||||||||    
T  23140280 ccaaaaatatgaagatctcataacaaaatatcttgtgcaaagaattcgaagatcttgtacaataataaaaaagtggcgcgccccattatacccttttgct 23140181  T
Q  105 gcttttgcttct 116  Q
    |||| |||||||    
T  23140180 gcttctgcttct 23140169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 23552070 - 23551959
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaat--ataagtggcgcaaccc-ttttacccttttgct 104  Q
    |||| ||||||||||||||||   ||||||| |||||| ||||||| ||||||||||| ||| |||  | |||||||||  ||| || ||||||||||||    
T  23552070 ccaaaaatatgaagatctcataacaaaatatcttgtgcaaagaattcgaagatcttgtacaataataaaaaagtggcgcgccccattatacccttttgct 23551971  T
Q  105 gcttttgcttct 116  Q
    |||| |||||||    
T  23551970 gcttctgcttct 23551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 19013255 - 19013119
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagt--atttctgacctagagcccatggtttcttatgcaacaat-ttagtgatttaattc 192  Q
    ||||||| || ||||||||||| ||||| || ||||||||||||  |||||||||||| || |||||||||||| || |||| |  || |||| || |||    
T  19013255 ccttttgttgtttttgcttctttgacaa-gctgcctattttagtttatttctgacctaaagtccatggtttcttgtggaacattcctattgatgtatttc 19013157  T
Q  193 ttggggctcaagtcaatgttagactataaatagagcagc 231  Q
    |||||||| |||| | |  ||||||||||||||||||||    
T  19013156 ttggggcttaagt-agttgtagactataaatagagcagc 19013119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 19124560 - 19124430
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttag--tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattct 193  Q
    ||||||| |||||||||||||||||| |||| ||||| |||||  ||||| |||| || ||||||||||||||| || |||| | || ||||  | ||||    
T  19124560 ccttttgttgcttttgcttcttcgac-aagctgccta-tttagtttatttatgacataaagcccatggtttcttgtgaaacattctattgatgcatttct 19124463  T
Q  194 tggggctcaagtcaatgttagactataaatagag 227  Q
    ||||||| |||| | | |||||||||||||||||    
T  19124462 tggggcttaagt-agttttagactataaatagag 19124430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 16134485 - 16134381
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa--gtggcgcaacccttt-tacccttttgctgcttt 109  Q
    ||||| || ||||||| |||||||||  ||||| |||||||||||||| |||| ||| |||||||  ||||| |  ||| || |||||||||||||||||    
T  16134485 aatataaatatctcatacaaaaatatcatgtgcaaagaatttgaagatattgtacaataatataaaagtggcacgccccattatacccttttgctgcttt 16134386  T
Q  110 tgctt 114  Q
    |||||    
T  16134385 tgctt 16134381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 20852025 - 20852116
Alignment:
Q  139 tatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttggggctcaagtcaatgttagactataaatagagcagc 231  Q
    ||||||||||||| ||||||||||||||| || |||| | || |||| || ||||||||||| |||| | |  ||| ||||||||||||||||    
T  20852025 tatttctgacctaaagcccatggtttcttgtggaacattctattgatgtatttcttggggcttaagt-agttataggctataaatagagcagc 20852116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 20281826 - 20281889
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||| | |||| |||||    
T  20281826 aatatgaatatctcatacaaaaatatcctgtgcaaagaatttgaagatcttttacaaatatata 20281889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 23140329 - 23140287
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaaga 50  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  23140329 ccaaaaatataaagatctcatgcaaaaatatattgtgcaaaga 23140287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 23552119 - 23552077
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaaga 50  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  23552119 ccaaaaatataaagatctcatgcaaaaatatattgtgcaaaga 23552077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 15583541 - 15583594
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatc 61  Q
    |||| ||||||||||||| || ||||||||| ||| || |||||||||||||||    
T  15583541 ccaaaaatatgaagatcttatacaaaaatatcttgcgcaaagaatttgaagatc 15583594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 44997954 - 44997991
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgc 45  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  44997954 ccaaaaatataaagatctcatgcaaaaatatattgtgc 44997991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 21509 - 21650
Alignment:
Q  96 ccttttgctgcttttgcttcttcgacaaagccgcctattttagtatttctgacctagagcccatggtttcttatgcaacaatttagtgatttaattcttg 195  Q
    |||||||  ||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||     
T  21509 ccttttgtggcttttgcttcttggacaa-gctgcctattttagtatttctgacctagaacccatggtttcttgtgcaacactttagtgatttatttctta 21607  T
Q  196 gggctcaagtcaatgttagactataaatagagcagccatctag 238  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  21608 gggctcaagtcaatgttagactataaattgagcagccatctag 21650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 44586 - 44502
Alignment:
Q  19 aagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat---aagtggcgcaacccttttacccttt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||  ||||||||||||||    
T  44586 aagatctcatgcaaaaatatattgtgcaaagaatttgaagatcttgtgcaaaaatataacaagtggcgcgccccttttacccttt 44502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 19831 - 19762
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||| |||||||||||||||| ||||||| | |||||| |||||||||||||||||||||||||||||||    
T  19831 ccaaaaatatgaagatctcatacaaaaatttcttgtgcaaagaatttgaagatcttgtgcaaaaatataa 19762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 10103 - 9999
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||  |||||||||  ||| || |||||||||||||||||    
T  10103 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccgttatacccttttgctgcttt 10004  T
Q  110 tgctt 114  Q
    |||||    
T  10003 tgctt 9999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 9172 - 9109
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  9172 aatatgaatatctcatacaaaaatataatgtgcaaagaatttgaagatcttgttcaaatatata 9109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 19237 - 19133
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatat--aagtggcgcaaccc-ttttacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||  ||| |||||  |||||||||  ||| || |||| ||||||||||||    
T  19237 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgaacaataatataaaagtggcgcgccccattatacctttttgctgcttt 19138  T
Q  110 tgctt 114  Q
    |||||    
T  19137 tgctt 19133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 61657 - 61744
Alignment:
Q  30 caaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa--gtggcgcaacccttt-tacccttttgctgcttttgctt 114  Q
    |||||||||  ||||| ||||||||||||||||||| |||||||||||  ||||| |  ||| || ||||||||||||||||||||||    
T  61657 caaaaatatcctgtgcaaagaatttgaagatcttgtacaaaaatataaaagtggcacgccccattatacccttttgctgcttttgctt 61744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 100165 - 100229
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa 77  Q
    |||||||| || |||| |||||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  100165 aatatgaatatgtcatacaaaaatataatgtgcaaagaatttgaagatcttgtacaataatataa 100229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 23060 - 23117
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaa 70  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| ||||    
T  23060 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaa 23117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 20955 - 21018
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatata 76  Q
    |||||||| ||||||| |||||||||  ||||| ||||||||||||||||||| |||| |||||    
T  20955 aatatgaatatctcatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaaatatata 21018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 48586 - 48687
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa--gtggcgcaacccttt-tacccttttgctgcttt 109  Q
    |||||||| ||| ||| |||||||||  ||||| ||||||||||||||||||| ||| |||||||  |||||||  | | || |||||||||||||||||    
T  48586 aatatgaatatcccatacaaaaatatcatgtgcaaagaatttgaagatcttgtacaataatataaaagtggcgcgcctcattatacccttttgctgcttt 48685  T
Q  110 tg 111  Q
    ||    
T  48686 tg 48687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 9384 - 9280
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa--gtggcgcaacccttt-tacccttttgctgcttt 109  Q
    |||||||| ||||||| |||||||||  ||||  ||||||||||||||||||| ||| |||||||  |||||||  ||| || ||  |||||||||||||    
T  9384 aatatgaatatctcatacaaaaatatcatgtgaaaagaatttgaagatcttgtacaataatataaaagtggcgcgccccattataatcttttgctgcttt 9285  T
Q  110 tgctt 114  Q
    |||||    
T  9284 tgctt 9280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 6977 - 7034
Alignment:
Q  8 ccaagaatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgt 65  Q
    |||| ||||||||||||||||  |||||||| |||||| ||||||| |||||||||||    
T  6977 ccaaaaatatgaagatctcatataaaaatatcttgtgcaaagaattagaagatcttgt 7034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 38267 - 38210
Alignment:
Q  13 aatatgaagatctcatgcaaaaatatattgtgcgaagaatttgaagatcttgtgcaaa 70  Q
    |||||||| ||||||| ||||||||| |||||| ||||||||||| || |||||||||    
T  38267 aatatgaatatctcatacaaaaatattttgtgcaaagaatttgaatattttgtgcaaa 38210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 38224 - 38141
Alignment:
Q  34 aatatattgtgcgaagaatttgaagatcttgtgcaaaaatataa--gtggcgcaacccttt-tacccttttgctgcttttgctt 114  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||  ||||| |  ||| || |||||||||| |||||||||||    
T  38224 aatattttgtgcaaagaatttgaagatcttgtacaaaaatataaaagtggcacgccccattatacccttttgttgcttttgctt 38141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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