View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_75 (Length: 237)
Name: NF1690_low_75
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 40945070 - 40945281
Alignment:
| Q |
10 |
gattattctatataaactgttatctagtgttgcagttgtcataagttaacaatcgttcatcctattcccacatattaagaattgattgttaatttgagaa |
109 |
Q |
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| T |
40945070 |
gattattctatataaactgttatctagtgttgcagttgtcataagttaacaatcgttcatcctattcccacatattaagaattgattgttaatttgagaa |
40945169 |
T |
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| Q |
110 |
aatactaaggtttgtgatcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaa |
209 |
Q |
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| T |
40945170 |
aatactaaggtttgtgatcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaa |
40945269 |
T |
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| Q |
210 |
tgtggtggtaat |
221 |
Q |
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|||||||||||| |
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| T |
40945270 |
tgtggtggtaat |
40945281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 40953323 - 40953412
Alignment:
| Q |
129 |
atggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggt |
218 |
Q |
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| T |
40953323 |
atggcaactagatgcttaagctttgtaacattagttattactacaagcatcttagtgttaggaatttctggtcaatttgaatgtggtggt |
40953412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 40959803 - 40959895
Alignment:
| Q |
126 |
atcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggt |
218 |
Q |
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| T |
40959803 |
atcatggcaactagatacttacactttacaacattagttcttgccgtaagcatcttagtggtaggaatttctggtcaatttgaatgtggtggt |
40959895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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