View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_low_80 (Length: 232)
Name: NF1690_low_80
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_80 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43102848 - 43102632
Alignment:
| Q |
1 |
ttctctccggtctctctctcggaatggaacctctttgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43102848 |
ttctctccggtctctctctcggaatggaacctctctgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcct |
43102749 |
T |
|
| Q |
101 |
cttcctattactatgttccattcccatttccttcatgtggcttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43102748 |
cttcctattactatgttccattcccatttccttcatgtggcttaacatgtcacaaatcctcatttggttgcaccagaacccaaagatcacagccatggct |
43102649 |
T |
|
| Q |
201 |
cacacatatctaatatt |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43102648 |
cacacatatctaatatt |
43102632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 33948682 - 33948749
Alignment:
| Q |
24 |
atggaacctctttgttcacaagccttcggagcaaaccgtcctaaactcctatccttaacacttcaacg |
91 |
Q |
| |
|
||||||||||||||||| |||||||| || || |||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
33948682 |
atggaacctctttgttctcaagcctttggtgctaaccgtccaaaacttctatcattaacacttcaacg |
33948749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University