View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_low_81 (Length: 228)
Name: NF1690_low_81
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_81 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 42111613 - 42111834
Alignment:
| Q |
7 |
tcaacactacattttttccacatcatcttcctttggcaaaccaatctatacggctcacgaagcaaccactgtcttccttcggcaaaccaatcttgtcttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
42111613 |
tcaacactacattttttccacatcatcttcctttaacaaaccaatctatacggctcacgaagcaaccaatgtcttccttcggcaacccaatcttgtcttc |
42111712 |
T |
|
| Q |
107 |
cttaaattttattatatcatgttcatgttccataatgacttattcaaatgatatgcctcaaaaatcttgatattctgtgttttatttccatttcttaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42111713 |
cttaaattttattatatcatgttcatgttccataatgacttattcaaatgatatgcctcaaaaatcttgatattctgtgttttatttccatttcttaaaa |
42111812 |
T |
|
| Q |
207 |
tctcatggaaagagcttgtaat |
228 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42111813 |
tctcatggaaagagcttgtaat |
42111834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 17594022 - 17593903
Alignment:
| Q |
109 |
taaattttattatatcatgttcatgttccataatgacttattcaaatgatatgcctcaaaaatcttgatattctgtgttttatttccatttcttaaaatc |
208 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17594022 |
taaattttgctatatcattttcatgttccataatgacttattcaaatgatatgcctcaaaaatcttgatattctgtgttttatttccttttcttaaaatt |
17593923 |
T |
|
| Q |
209 |
tcatggaaagagcttgtaat |
228 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
17593922 |
tcatggaaaaagcttgtaat |
17593903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University