View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_low_84 (Length: 226)

Name: NF1690_low_84
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_low_84
NF1690_low_84
[»] chr8 (10 HSPs)
chr8 (30-216)||(25717129-25717315)
chr8 (32-216)||(25393228-25393412)
chr8 (30-216)||(25653240-25653426)
chr8 (53-216)||(25454918-25455081)
chr8 (46-216)||(25606573-25606743)
chr8 (46-216)||(25807185-25807355)
chr8 (30-216)||(25697296-25697482)
chr8 (45-216)||(25342916-25343087)
chr8 (30-216)||(25324592-25324780)
chr8 (52-175)||(24872517-24872640)
[»] scaffold1415 (1 HSPs)
scaffold1415 (30-216)||(972-1158)
[»] scaffold0070 (3 HSPs)
scaffold0070 (30-216)||(35022-35208)
scaffold0070 (46-216)||(14995-15165)
scaffold0070 (132-216)||(48588-48672)
[»] chr4 (1 HSPs)
chr4 (50-106)||(10325890-10325946)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25717315 - 25717129
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||    
T  25717315 acttgaggtgttatacttgtataacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcactcatttgggggttgatcagaat 25717216  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| || |||||    
T  25717215 agcctctcaggcacacttccatcaaatacgggatatagccttcctaacctgcaatatctatacttgaatcataacaattttgttgga 25717129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 25393412 - 25393228
Alignment:
Q  32 ttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatag 131  Q
    |||||||||||||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| || ||||| |||||||| ||||||    
T  25393412 ttgaggtgttatacttgcctaacaatagcttaagtggatctatttcttccaaaatcttcaacttgtcatcactcactgatttggaggttgatctgaatag 25393313  T
Q  132 cctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||    
T  25393312 cctctcaggcacaattccatcaaatacgggatatagccttcctagtctgcaatatctatacttgaatgataacaattttgttgga 25393228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25653426 - 25653240
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||| | |||||||||||||    
T  25653426 acttgaggtgctaggcttgtataacaatagcttaagtggatctattccttccaaaatcttcaacatgtcatcactcattgatttcgaggttgatcagaat 25653327  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |||||| || |||||    
T  25653326 agcctctcaggcacaattccatcaaatacgggatatagccttcctaatctgcaatatttactcttgaatgataacaattttgttgga 25653240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 25455081 - 25454918
Alignment:
Q  53 acaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacacttccatc 152  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||||  | |||||||||||||||||| |||||||    
T  25455081 acaataggttaagtggatctattccttccaaaatcttcaacttgtcatcactcactgctttggtggttgaaaataatagcctctcaggcacaattccatc 25454982  T
Q  153 aaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| || |||||    
T  25454981 aaatacgggatatagccttcctagtctgcaatatctattcttgaatgataacaattttgttgga 25454918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 25606743 - 25606573
Alignment:
Q  46 ttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacac 145  Q
    |||| ||||||||| ||||||| ||||||||||||||| ||||| ||| |||||||||||| |||||| | ||||||||| ||||| ||||||||| |||    
T  25606743 ttgtttaacaataggttaagtggatctattccttccaaaatcttgaacatgtcatcactcactgctttagtggttgatcataatagtctctcaggcccac 25606644  T
Q  146 ttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||    
T  25606643 ttccatcaaatacgggatatagccttcctagtttgcaatatctatacttgaatgaaaacaattttgttgga 25606573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 25807355 - 25807185
Alignment:
Q  46 ttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacac 145  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    ||||| ||||||  | ||||||||||||||||||     
T  25807355 ttgtataacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacacatttggaggttgaaaataatagcctctcaggcacaa 25807256  T
Q  146 ttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| || |||||    
T  25807255 ttccatcaaatacgggatatagccttcctagtctgcaatatctacacttgaatgataacaattttgttgga 25807185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25697482 - 25697296
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||| |||  |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    ||||| ||||||||  |||    
T  25697482 acttgaggtgctatcattgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacatatttggaggttgatcgtaat 25697383  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||| || |||||    
T  25697382 agcctctcaagcacaattccatcaaatacgggatatagccttcctaacctgcaatatctacacttgtatcaaaacaattttgttgga 25697296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 25343087 - 25342916
Alignment:
Q  45 cttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcaca 144  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |  ||||| ||||||  ||||||||||||||||||||    
T  25343087 cttgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacttatttggaggttgaagagaatagcctctcaggcaca 25342988  T
Q  145 cttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
     ||||||||||||||||||||||||||||||  |||||| ||||| |||||||| | |||||| || |||||    
T  25342987 attccatcaaatacgggatatagccttcctagcctgcaacatctacacttgaataataacaattttgttgga 25342916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25324780 - 25324592
Alignment:
Q  30 acttgaggtgttatacttgtata--acaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcaga 127  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |    ||||     ||| || |    
T  25324780 acttgaggtgttatacttgtatataacaatagcttaagtggatctattccttccaaaatcttcaacatgtcatcacttacatatttgtatcctgaccaaa 25324681  T
Q  128 atagcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||  |||||| || | | |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| || |||||    
T  25324680 atcacctctctgggataattccttcaaatacgggatatagccttcctaacctgcaatatctattcttgaatgataacaattttgttgga 25324592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 24872517 - 24872640
Alignment:
Q  52 aacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacacttccat 151  Q
    ||||||||||| | || |||||| |||||||| ||||||||| |||||||||| || |  |||    |||| || |||  |||||| || | | ||||||    
T  24872517 aacaatagctttactggatctataccttccaaaatcttcaacatgtcatcactgataggcttgtatcttgaacaaaatcacctctccgggataattccat 24872616  T
Q  152 caaatacgggatatagccttccta 175  Q
    ||||||||||||||| ||||||||    
T  24872617 caaatacgggatataaccttccta 24872640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1415 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 1158 - 972
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||| |||| ||||||||    
T  1158 acttgagctgttatacttgtataacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcactgatttggaggttaatcagaat 1059  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||| || |||||||| || |||||    
T  1058 agcctctcaggcacacttccatcaaatacgggatatagccttcctaacctgcataatctacacttgtatcaaaacaattttgttgga 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 35022 - 35208
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||| |||  |||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||| ||||||||| |||    
T  35022 acttgaggtgctattattgtctaacaatagcttaagtggatctattccttctaaaatcttcaacttgtcatcactcactgctttggtggttgatcataat 35121  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||| || |||||    
T  35122 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctacacttgtttcaaaacaattttgttgga 35208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 14995 - 15165
Alignment:
Q  46 ttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacac 145  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |  ||||| ||||||||||||||| ||||||||||||     
T  14995 ttgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcgctcactaatttggaggttgatcagaatagtctctcaggcacaa 15094  T
Q  146 ttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || | |||||| || |||||    
T  15095 ttccatcaaatacgggatatagccttcctagtctgcaatatctattcttggatcataacaattttgttgga 15165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 48588 - 48672
Alignment:
Q  132 cctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||| | |||||||||| || || |||||||||||||| || ||||||||| ||||| | | ||||||| || |||||    
T  48588 cctctcaggcataattccatcaaaaacaggttatagccttcctaagctacaatatctagacttggaaggaaacaattttgttgga 48672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 10325946 - 10325890
Alignment:
Q  50 ataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactca 106  Q
    ||||||||||||| |||| | | ||||||||||| ||||| ||| ||||||||||||    
T  10325946 ataacaatagctttagtggagccattccttccaaaatctttaacatgtcatcactca 10325890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University