View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_86 (Length: 218)
Name: NF1690_low_86
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 38588445 - 38588262
Alignment:
| Q |
15 |
cagagaaccgcttgcaagagcaaagtttgaaaaaatgcagaaaaatcaagtaaatttcccccgattcgtttctctggacgattgacattattgatcacat |
114 |
Q |
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| T |
38588445 |
cagagaaccgcttgcaagagcaaagtttgaaaaaatgcagaaaaatcaagtaaatttcccccgatacgtttctctagacgattgacattattgatcacat |
38588346 |
T |
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| Q |
115 |
atgcgccatgcaatgaccaatgaaaacctgatggcaacacctctaaaccgattccaccccatccaattagaccagtcaaagatg |
198 |
Q |
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| T |
38588345 |
atgcgccatgcaatgaccaatgaaaacctgatggcaacacctctaaaccgattccaccccatccaattagaccagtcaaagatg |
38588262 |
T |
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Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 22643141 - 22643322
Alignment:
| Q |
18 |
agaaccgcttgcaagagcaaagtttgaaaaaatgcagaaaaatcaagtaaatttcccccgattcgtttctctggacgattgacattattgatcacatatg |
117 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| | |||| |||||||| ||||||||||||||| || |||| | |
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| T |
22643141 |
agaaccacttgcaagaacaaagtttgaaaaaatgcagaaaaatcaagtaattttggctcgatatgtttctctagacgattgacattatcgaacacaatta |
22643240 |
T |
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| Q |
118 |
cgccatgcaatgaccaatgaaaacctgatggcaacacctctaaaccgattccaccccatccaattagaccagtcaaagatga |
199 |
Q |
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| T |
22643241 |
cgccatgcaatgaccaacgaaaacctgatggcaacacctctaaatcaattccacgccatccaattagaccagtcaaagatga |
22643322 |
T |
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