View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1691-Insertion-1 (Length: 482)

Name: NF1691-Insertion-1
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1691-Insertion-1
NF1691-Insertion-1
[»] chr4 (4 HSPs)
chr4 (9-482)||(30108056-30108537)
chr4 (19-73)||(27131672-27131726)
chr4 (34-77)||(20742371-20742414)
chr4 (29-77)||(9018879-9018927)
[»] chr6 (2 HSPs)
chr6 (19-73)||(2468472-2468526)
chr6 (21-71)||(18262785-18262835)
[»] chr8 (2 HSPs)
chr8 (32-72)||(14619019-14619059)
chr8 (26-59)||(29896113-29896146)
[»] chr7 (2 HSPs)
chr7 (19-66)||(25280404-25280451)
chr7 (10-67)||(23423689-23423745)
[»] chr5 (5 HSPs)
chr5 (30-77)||(18542221-18542268)
chr5 (22-72)||(20407904-20407954)
chr5 (9-73)||(15086704-15086767)
chr5 (29-73)||(29458355-29458399)
chr5 (20-68)||(38685299-38685347)
[»] chr2 (5 HSPs)
chr2 (42-73)||(31095149-31095180)
chr2 (34-77)||(34687008-34687051)
chr2 (34-77)||(34709420-34709463)
chr2 (37-73)||(15804120-15804156)
chr2 (20-72)||(29931740-29931792)
[»] chr3 (1 HSPs)
chr3 (19-73)||(49636826-49636879)
[»] chr1 (1 HSPs)
chr1 (37-73)||(17639930-17639966)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 30108056 - 30108537
Alignment:
Q  9 gtccgctgtccgacactaacgcatgtgattactttcaattacttccattttctcaaattattaccggtgccaatcaagtttatgtgtttaatgatttagc 108  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  30108056 gtccgctgtccgacagtaacgcatgtgattacgttcaattacttccattttctcaaattattaccggtgccaacgaagtttatgtgtttaatgatttagc 30108155  T
Q  109 tgacaaatgaaggaaaatggtttgaccttatctttgacaccaacaattcgattaaagacaatagcacgatgaccaccctcaacattatacaaagtatttg 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30108156 tgaaaaatgaaggaaaatggtttgaccttatctttgacaccaacaattcgattaaagacaatagcacgatgaccaccctcaacattatacaaagtatttg 30108255  T
Q  209 tagctccatagacagcaagtccaccaagaatgctaactttaagcaaagcagaaattccgccaccgccaggaacctttgggatcttcatgttgttgaaatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30108256 tagctccatagacagcaagtccaccaagaatgctaactttaagcaaagcagaaattccgccaccgccaggaacctttgggatcttcatgttgttgaaatt 30108355  T
Q  309 catctatcaaatca------acatc--gaagcatataataaatcatatgaataaaatcacatgcgaagaacataattagagtaagtagaaattgaacctt 400  Q
    ||||||||||| ||      | |||   | ||| || |   | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30108356 catctatcaaagcatataataaatcataatgcaaattagttaacatatgaataaaatcacaagcgaagaacataattagagtaagtagaaattgaacctt 30108455  T
Q  401 gcgttgcggtgagtggttcaagaggttgttgtttggctttgcggaaagaaagggtttcgatgggttatagggttttagggct 482  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30108456 gcgttgcggtgagtggttcaagaggttgttgtttggctttgtggaaagaaagggtttcgatgggttatagggttttagggct 30108537  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 27131672 - 27131726
Alignment:
Q  19 cgacactaacgcatgtgattactttcaattacttccattttctcaaattattacc 73  Q
    |||||| ||| |||||| |||| |||||||||||||||||||| |||||||||||    
T  27131672 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattacc 27131726  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 20742414 - 20742371
Alignment:
Q  34 tgattactttcaattacttccattttctcaaattattaccggtg 77  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  20742414 tgattacattcaattacttgcattttctcaaattattactggtg 20742371  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 9018879 - 9018927
Alignment:
Q  29 gcatgtgattactttcaattacttccattttctcaaattattaccggtg 77  Q
    ||||||| |||| ||||||||||| ||||||||||||||| ||| ||||    
T  9018879 gcatgtggttacattcaattactttcattttctcaaattactactggtg 9018927  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 2468472 - 2468526
Alignment:
Q  19 cgacactaacgcatgtgattactttcaattacttccattttctcaaattattacc 73  Q
    |||||| ||| |||||| |||| |||||||||||||||||||| |||||||||||    
T  2468472 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattacc 2468526  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 18262785 - 18262835
Alignment:
Q  21 acactaacgcatgtgattactttcaattacttccattttctcaaattatta 71  Q
    ||||| || |||||||||||||||||||| ||| ||||| |||||||||||    
T  18262785 acactgacacatgtgattactttcaattaattcaattttatcaaattatta 18262835  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 14619019 - 14619059
Alignment:
Q  32 tgtgattactttcaattacttccattttctcaaattattac 72  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  14619019 tgtgatttcattcaattacttccattttctcaaattattac 14619059  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 29896146 - 29896113
Alignment:
Q  26 aacgcatgtgattactttcaattacttccatttt 59  Q
    ||||||||||||||| ||||||||||||||||||    
T  29896146 aacgcatgtgattacattcaattacttccatttt 29896113  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 25280451 - 25280404
Alignment:
Q  19 cgacactaacgcatgtgattactttcaattacttccattttctcaaat 66  Q
    |||||| ||| ||||||||||  |||||||||||||||||||||||||    
T  25280451 cgacacaaacacatgtgattatattcaattacttccattttctcaaat 25280404  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 23423689 - 23423745
Alignment:
Q  10 tccgctgtccgacactaacgcatgtgattactttcaattacttccattttctcaaatt 67  Q
    |||| ||||| |||||||  |||||||||| |||||||||||| ||||||||||||||    
T  23423689 tccggtgtccaacactaaatcatgtgattattttcaattactt-cattttctcaaatt 23423745  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 18542221 - 18542268
Alignment:
Q  30 catgtgattactttcaattacttccattttctcaaattattaccggtg 77  Q
    ||||||||||| |||||||||||  |||||||||||||||||| ||||    
T  18542221 catgtgattacattcaattacttgtattttctcaaattattactggtg 18542268  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 20407954 - 20407904
Alignment:
Q  22 cactaacgcatgtgattactttcaattacttccattttctcaaattattac 72  Q
    |||||| |||||||||||| |||||| |||| |||||| ||||||||||||    
T  20407954 cactaatgcatgtgattacattcaatcactttcattttttcaaattattac 20407904  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 15086767 - 15086704
Alignment:
Q  9 gtccgctgtccgacactaacgcatgtgattactttcaattacttccattttctcaaattattacc 73  Q
    ||||| |||||||||| ||| ||||||||||| ||||| || || || |||||||||||||||||    
T  15086767 gtccggtgtccgacaccaacacatgtgattacgttcaaataatt-cactttctcaaattattacc 15086704  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29458399 - 29458355
Alignment:
Q  29 gcatgtgattactttcaattacttccattttctcaaattattacc 73  Q
    |||||| ||||| ||||||  ||||||||||||||||||||||||    
T  29458399 gcatgtcattacattcaatctcttccattttctcaaattattacc 29458355  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 38685299 - 38685347
Alignment:
Q  20 gacactaacgcatgtgattactttcaattacttccattttctcaaatta 68  Q
    |||||| || |||||| |||| |||||||||||||||||||||| ||||    
T  38685299 gacactgacacatgtggttacattcaattacttccattttctcatatta 38685347  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 31095180 - 31095149
Alignment:
Q  42 ttcaattacttccattttctcaaattattacc 73  Q
    ||||||||||||||||||||||||||||||||    
T  31095180 ttcaattacttccattttctcaaattattacc 31095149  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 34687051 - 34687008
Alignment:
Q  34 tgattactttcaattacttccattttctcaaattattaccggtg 77  Q
    |||||||||||||||| |  ||||||||||||||||||||||||    
T  34687051 tgattactttcaattaatatcattttctcaaattattaccggtg 34687008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 34709463 - 34709420
Alignment:
Q  34 tgattactttcaattacttccattttctcaaattattaccggtg 77  Q
    |||||||||||||||| |  ||||||||||||||||||||||||    
T  34709463 tgattactttcaattaatatcattttctcaaattattaccggtg 34709420  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 15804120 - 15804156
Alignment:
Q  37 ttactttcaattacttccattttctcaaattattacc 73  Q
    |||| |||||| |||||||||||||||||||||||||    
T  15804120 ttacattcaatcacttccattttctcaaattattacc 15804156  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 29931740 - 29931792
Alignment:
Q  20 gacactaacgcatgtgattactttcaattacttccattttctcaaattattac 72  Q
    |||||| || ||||||||||| |||| |||||  |||||||||||||||||||    
T  29931740 gacactgacacatgtgattacattcagttactctcattttctcaaattattac 29931792  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 49636826 - 49636879
Alignment:
Q  19 cgacactaacgcatgtgattactttcaattacttccattttctcaaattattacc 73  Q
    |||||| | ||||||||||||| |||||||| ||| |||||||||||||||||||    
T  49636826 cgacaccagcgcatgtgattacattcaattaattc-attttctcaaattattacc 49636879  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 17639966 - 17639930
Alignment:
Q  37 ttactttcaattacttccattttctcaaattattacc 73  Q
    |||||||| || |||||||||||||||||||||||||    
T  17639966 ttactttcgatcacttccattttctcaaattattacc 17639930  T

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