View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691-Insertion-3 (Length: 370)
Name: NF1691-Insertion-3
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 39044289 - 39044646
Alignment:
| Q |
8 |
tgagatttcctgcatttaagtaaatatataaataagatgaagtt-gtatgagaaaaagaaagaagtgcttaaaagccaaactgcatgctcatgcagttga |
106 |
Q |
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| T |
39044289 |
tgagatttcctgcatttaagtaaatatataaataagatgaagtttgtatgagaaaaagaaagaagtgcttaaaagccaaactgcatgctcatgcagttga |
39044388 |
T |
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| Q |
107 |
attcatctgcaagcaatccaaatccgcagttgtgcatgtgatgtggtgggtgtaaggctctttaaattttccatgaatactttatgtttgtctataccct |
206 |
Q |
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| T |
39044389 |
attcatctgcaagcaatccaaatctgcagttgtgcatgtgatgtggtgggtgtaaggctctttaaattttccatgaatactttatgtttgtctataccct |
39044488 |
T |
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| Q |
207 |
ataagttgcatataatttttatgttcgataaatactttatatggaattgtggactatatgtagtataatacttgtatcacgcatggaattcacgtgcaaa |
306 |
Q |
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| T |
39044489 |
ataagttgcaaataatttttatgttcgataaatactttatatggaattgtggactatatgtagtataatacttgtatcacgcatggaattca-----aaa |
39044583 |
T |
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| Q |
307 |
ataaattagtatttttgtgttattgaattatgagccacgagtgcatatactacgaatttgtat |
369 |
Q |
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| T |
39044584 |
ataaattagtatttttgtgttattgaattatgagccacgagtgcatatactacgaatttgtat |
39044646 |
T |
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