View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1691-Insertion-4 (Length: 671)

Name: NF1691-Insertion-4
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1691-Insertion-4
NF1691-Insertion-4
[»] chr6 (3 HSPs)
chr6 (166-464)||(15516410-15516708)
chr6 (8-164)||(25473231-25473387)
chr6 (594-644)||(15517976-15518025)
[»] chr4 (6 HSPs)
chr4 (8-164)||(36207662-36207818)
chr4 (8-145)||(36232983-36233120)
chr4 (8-164)||(36223011-36223166)
chr4 (595-671)||(6667824-6667898)
chr4 (595-671)||(6671490-6671564)
chr4 (595-636)||(20058203-20058243)
[»] chr1 (7 HSPs)
chr1 (8-156)||(9767481-9767632)
chr1 (164-266)||(4673919-4674022)
chr1 (593-644)||(24981295-24981345)
chr1 (595-644)||(47580331-47580379)
chr1 (612-645)||(51465449-51465482)
chr1 (595-644)||(1953624-1953672)
chr1 (311-368)||(12143684-12143741)
[»] chr8 (5 HSPs)
chr8 (511-671)||(17028186-17028367)
chr8 (511-671)||(17558622-17558803)
chr8 (466-521)||(17028117-17028172)
chr8 (466-521)||(17558553-17558608)
chr8 (595-644)||(1789032-1789081)
[»] chr7 (3 HSPs)
chr7 (164-387)||(3333821-3334043)
chr7 (595-644)||(11673937-11673986)
chr7 (164-208)||(33759807-33759854)
[»] chr3 (2 HSPs)
chr3 (164-266)||(21144846-21144952)
chr3 (219-266)||(21144690-21144739)
[»] chr2 (2 HSPs)
chr2 (595-644)||(2590437-2590485)
chr2 (595-642)||(18739246-18739293)
[»] chr5 (3 HSPs)
chr5 (599-644)||(18594755-18594799)
chr5 (595-647)||(26703148-26703199)
chr5 (595-647)||(26972881-26972932)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 166 - 464
Target Start/End: Original strand, 15516410 - 15516708
Alignment:
Q  166 ttgtaaatattgctgatatttcaaaagttcaaatatttatattactcagaataagtgaaaaataattttagttgaaaatcataaattaattgtgaaattt 265  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15516410 ttgtaaatattgctgatatttcaaaagttcaaatataaatattactcagaataagtgaaaaataattttagttgaaaatcataaattaattgtgaaattt 15516509  T
Q  266 ttattactagaattttactcaaatgaattattttgaccagttctatatatacagtaacaacccattcctttattctttctatgagtcattaaagaaaata 365  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  15516510 ttattactagaattttactcaaattaattattttgaccggttctatatatacaataacaacccattcctttattctctccatgagtcattaaagaaaata 15516609  T
Q  366 catgtttttatttagctgtccttgactttctcttaaacgtgcttaacctactagtatccctatttttatgctatgaatgggtttcaaagaagatgatat 464  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15516610 catgtttttatttagttgtccttgactttctcttaaacgtgcttaacctactagtatccctatttttatgctatgaatgggtttcaaagaagatgatat 15516708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 25473387 - 25473231
Alignment:
Q  8 aagtccaagcctatagtctcaccacaaggaatctcagcaacaagtttaggtggttgctcaatagcaaactgcgtcttatcagctttagaaagcatggcat 107  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25473387 aagtccaagcctatagtctcaccacaaggcatctcatcaacaggtttaggtggttgctcaatagtaaactgcgtcttatcagctttagaaagcatggcat 25473288  T
Q  108 tcacctcattgagtctttcaacaatttcctttcccaacttgtagcttgacacaaagt 164  Q
    ||||||||||||| || |||||||||||||| || ||||||||||||||||||||||    
T  25473287 tcacctcattgagcctctcaacaatttccttacctaacttgtagcttgacacaaagt 25473231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 15517976 - 15518025
Alignment:
Q  594 atttctctcatccaaaattattgagtttctgggttacatctcctgatatct 644  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||| ||||||    
T  15517976 atttccctcattcaaaat-attgagtttctgggttacatctcctcatatct 15518025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 6e-76; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 36207662 - 36207818
Alignment:
Q  8 aagtccaagcctatagtctcaccacaaggaatctcagcaacaagtttaggtggttgctcaatagcaaactgcgtcttatcagctttagaaagcatggcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36207662 aagtccaagcctatagtctcaccacaaggaatctcagcaacaagtttaggtggttgctcaatagcaaactgcgtcttatcagctttagaaagcatggcat 36207761  T
Q  108 tcacctcattgagtctttcaacaatttcctttcccaacttgtagcttgacacaaagt 164  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  36207762 tcacctcattgagactctcaacaattttctttcccaacttgtagcttgacacaaagt 36207818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 36232983 - 36233120
Alignment:
Q  8 aagtccaagcctatagtctcaccacaaggaatctcagcaacaagtttaggtggttgctcaatagcaaactgcgtcttatcagctttagaaagcatggcat 107  Q
    |||| |||||||||||| |||||| |||| |||||| ||||| |||||||||||||||||||||||| |||| | |||  ||||||||||||||||||||    
T  36232983 aagttcaagcctatagtttcaccaaaaggcatctcatcaacaggtttaggtggttgctcaatagcaatctgcatattaggagctttagaaagcatggcat 36233082  T
Q  108 tcacctcattgagtctttcaacaatttcctttcccaac 145  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  36233083 tcacgtcattgagtctctcaacaatttcctttcccaac 36233120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 36223011 - 36223166
Alignment:
Q  8 aagtccaagcctatagtctcaccacaaggaatctcagcaacaagtttaggtggttgctcaatagcaaactgcgtcttatcagctttagaaagcatggcat 107  Q
    ||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||  | |||| ||  ||| | ||| |||||||| ||||||||||||    
T  36223011 aagtccaagcctacagtctcaccacaaggcatct-agcaacacgtttaggtggttgtaccatagaaatatgcatattaacagctttataaagcatggcat 36223109  T
Q  108 tcacctcattgagtctttcaacaatttcctttcccaacttgtagcttgacacaaagt 164  Q
    ||||||||||||| || |||||||| | ||| |||||||||||||||||||||||||    
T  36223110 tcacctcattgagcctctcaacaatcttcttacccaacttgtagcttgacacaaagt 36223166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 6667898 - 6667824
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatctgtgtacatatttaagctgttctgtcac 671  Q
    |||||||||||||| || ||||| ||  ||||||||||||||||||||||| | | |||||| ||||||||||||||    
T  6667898 tttctctcatccaatat-attgaattcatgggttacatctcctgatatctgag-atatatttgagctgttctgtcac 6667824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 6671564 - 6671490
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatctgtgtacatatttaagctgttctgtcac 671  Q
    |||||||||||||| || ||||| ||  ||||||||||||||||||||||| | | |||||| ||||||||||||||    
T  6671564 tttctctcatccaagat-attgaattcatgggttacatctcctgatatctgag-atatatttgagctgttctgtcac 6671490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 636
Target Start/End: Complemental strand, 20058243 - 20058203
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcc 636  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  20058243 tttctctcatccaaa-ttattgagtttctaggttacatctcc 20058203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 9767481 - 9767632
Alignment:
Q  8 aagtccaagcctatagtctcaccacaaggaatctcagcaacaagtttaggtggttgctcaatagcaaactgcg---tcttatcagctttagaaagcatgg 104  Q
    ||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||   |||||||| |||||||||||||||    
T  9767481 aagtccaagcctatagtatcaccgcaaggcatctcagcaacaggtttaggtggttgctgaatagcaaactgcgtgatcttatcaactttagaaagcatgg 9767580  T
Q  105 cattcacctcattgagtctttcaacaatttcctttcccaacttgtagcttga 156  Q
    |||||||||| ||||| || |||||||||| |||||||| ||||||||||||    
T  9767581 cattcacctcgttgagcctctcaacaattttctttcccaccttgtagcttga 9767632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 4674022 - 4673919
Alignment:
Q  164 tgttgtaaatattgctgatatttcaaaagttcaaatatttatattactcagaataagtgaaaaa-taattttagttgaaaatcataaattaattgtgaaa 262  Q
    |||||||||||||| | |||||||||||||||||||||  |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4674022 tgttgtaaatattgtttatatttcaaaagttcaaatataaatattacttagaataagtgaaaaaataattttagttgaaaatcataaattaattgtgaaa 4673923  T
Q  263 tttt 266  Q
    ||||    
T  4673922 tttt 4673919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 593 - 644
Target Start/End: Complemental strand, 24981345 - 24981295
Alignment:
Q  593 tatttctctcatccaaaattattgagtttctgggttacatctcctgatatct 644  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||||||    
T  24981345 tatttttctcatccaaaat-attgagtttctgtgttacatctcctgatatct 24981295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 644
Target Start/End: Original strand, 47580331 - 47580379
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatct 644  Q
    |||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  47580331 tttctctcatccaaaatg-ttgagtttctgggttacatctcctgacatct 47580379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 645
Target Start/End: Original strand, 51465449 - 51465482
Alignment:
Q  612 tattgagtttctgggttacatctcctgatatctg 645  Q
    ||||||||||||||||||||||||||||||||||    
T  51465449 tattgagtttctgggttacatctcctgatatctg 51465482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 644
Target Start/End: Original strand, 1953624 - 1953672
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatct 644  Q
    ||||||| |||||||||  |||||||||||||||||||||||||| ||||    
T  1953624 tttctcttatccaaaatg-ttgagtttctgggttacatctcctgacatct 1953672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 12143741 - 12143684
Alignment:
Q  311 tatatacagtaacaacccattcctttattctttctatgagtcattaaagaaaatacat 368  Q
    |||||||| |||||| ||||||||||| ||| | |||||||||| |||| ||||||||    
T  12143741 tatatacactaacaatccattcctttaatctctttatgagtcatcaaagcaaatacat 12143684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 511 - 671
Target Start/End: Original strand, 17028186 - 17028367
Alignment:
Q  511 tatatatatattgctttcagcaatacatagagtacagaaaataatcaacctgcatacagtgcatatattctccctcacttcat----------------- 593  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  17028186 tatatatatattgctttcagcaatacgcagagtacagaaaataatcaacctgcatacagtgcatatattctccctcacttcatgtttctttttacacata 17028285  T
Q  594 ----atttctctcatccaaaattattgagtttctgggttacatctcctgatatctgtgtacatatttaagctgttctgtcac 671  Q
         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  17028286 attattttctctcatccaaaattattgagtttctaggttacatctcctgatatctgtgtatatatttgagctgttgtgtcac 17028367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 511 - 671
Target Start/End: Original strand, 17558622 - 17558803
Alignment:
Q  511 tatatatatattgctttcagcaatacatagagtacagaaaataatcaacctgcatacagtgcatatattctccctcacttcat----------------- 593  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||                     
T  17558622 tatatatatattgctttcagcaatacgcagagtacagaaaataatcaacctgcatacagtgcatatattctccctcacttcatgtttctttttacacata 17558721  T
Q  594 ----atttctctcatccaaaattattgagtttctgggttacatctcctgatatctgtgtacatatttaagctgttctgtcac 671  Q
         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  17558722 attattttctctcatccaaaattattgagtttctaggttacatctcctgatatctgtgtatatatttgagctgttgtgtcac 17558803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 17028117 - 17028172
Alignment:
Q  466 tctcccacgtttattaatgtgtaacgatcattgttgcaaatagcttatatatatat 521  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  17028117 tctcccacgtttattaatgtgtaacggtcattgttgcaaatagcttttatatatat 17028172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 17558553 - 17558608
Alignment:
Q  466 tctcccacgtttattaatgtgtaacgatcattgttgcaaatagcttatatatatat 521  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  17558553 tctcccacgtttattaatgtgtaacggtcattgttgcaaatagcttttatatatat 17558608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 644
Target Start/End: Complemental strand, 1789081 - 1789032
Alignment:
Q  595 tttctctcatccaaaattattgag-tttctgggttacatctcctgatatct 644  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  1789081 tttctctcatccaaaat-attgaggtttctgggttacatctcatgatatct 1789032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 164 - 387
Target Start/End: Complemental strand, 3334043 - 3333821
Alignment:
Q  164 tgttgtaaatattgctgatatttcaaaagttcaaatatttatattactcagaataagtgaaaaataattttagttgaaaatcataaattaatt-gtgaaa 262  Q
    |||||||||||||  | |||||||||||  ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||    ||     
T  3334043 tgttgtaaatattatttatatttcaaaaaatcaaatataaatattacttagaataagtgaaaaataattttagttgaaaatcataaattaattaactaat 3333944  T
Q  263 tttttattactagaatt-ttactcaaatgaattattttgaccagttctatatatacagtaacaacccattcctttattctttctatgagtcattaaagaa 361  Q
    |||||||||||| |||| ||| | ||  || ||  |||||||  || |||| ||||  |||||||||| |||||||  || |||||||||||| |||| |    
T  3333943 tttttattactaaaattgttattgaa--gatttgctttgaccgattttatagatac-ttaacaacccaatcctttaaactctctatgagtcatcaaagca 3333847  T
Q  362 aatacatgtttttatttagctgtcct 387  Q
    ||||||||||||||||||| ||||||    
T  3333846 aatacatgtttttatttagttgtcct 3333821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 644
Target Start/End: Original strand, 11673937 - 11673986
Alignment:
Q  595 tttctctcatccaaaattattgag-tttctgggttacatctcctgatatct 644  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  11673937 tttctctcatccaaaat-attgaggtttctgggttacatctcatgatatct 11673986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 33759807 - 33759854
Alignment:
Q  164 tgttgtaaatattgctgatatttcaaaag---ttcaaatatttatatt 208  Q
    |||||||||||||||| ||||||||||||   ||||||||||||||||    
T  33759807 tgttgtaaatattgcttatatttcaaaagttcttcaaatatttatatt 33759854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 21144846 - 21144952
Alignment:
Q  164 tgttgtaaatattgctgatatttcaaaagttc---aaatatttatattactcagaataagtgaaaaataattttagttgaaaatcataa--attaattgt 258  Q
    |||||||||||||||| |||||||||||||||   ||||||  ||||| || |   || |||||||||| |||||||||||||||||||  |||||||||    
T  21144846 tgttgtaaatattgcttatatttcaaaagttcttcaaatataaatattccttatttta-gtgaaaaatatttttagttgaaaatcataattattaattgt 21144944  T
Q  259 gaaatttt 266  Q
    ||||||||    
T  21144945 gaaatttt 21144952  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 21144739 - 21144690
Alignment:
Q  219 agtgaaaaataattttagttgaaaatcataa--attaattgtgaaatttt 266  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||||    
T  21144739 agtgaaaaatatttttagttggaaatcataattattaattgtgaaatttt 21144690  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 644
Target Start/End: Original strand, 2590437 - 2590485
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatct 644  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  2590437 tttctctcatctaaaat-attgagtttctgggttatatctcctgatatct 2590485  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 642
Target Start/End: Complemental strand, 18739293 - 18739246
Alignment:
Q  595 tttctctcatccaaaattattgag-tttctgggttacatctcctgatat 642  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  18739293 tttctctcatccaaaat-attgaggtttctgggttacatctcatgatat 18739246  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 644
Target Start/End: Original strand, 18594755 - 18594799
Alignment:
Q  599 tctcatccaaaattattgagtttctgggttacatctcctgatatct 644  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  18594755 tctcatctaaaat-attgagtttttgggttacatctcctgatatct 18594799  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 647
Target Start/End: Complemental strand, 26703199 - 26703148
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatctgtg 647  Q
    ||||||||||||||||| |||||||||   ||||||||||| |||||||||||    
T  26703199 tttctctcatccaaaat-attgagtttacaggttacatctcttgatatctgtg 26703148  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 647
Target Start/End: Complemental strand, 26972932 - 26972881
Alignment:
Q  595 tttctctcatccaaaattattgagtttctgggttacatctcctgatatctgtg 647  Q
    ||||||||||||||||| |||||||||   ||||||||||| |||||||||||    
T  26972932 tttctctcatccaaaat-attgagtttacaggttacatctcttgatatctgtg 26972881  T

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