View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1691-Insertion-5 (Length: 805)

Name: NF1691-Insertion-5
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1691-Insertion-5
NF1691-Insertion-5
[»] chr8 (10 HSPs)
chr8 (8-494)||(7605040-7605528)
chr8 (656-727)||(7605706-7605777)
chr8 (728-804)||(17867442-17867518)
chr8 (757-804)||(37456113-37456160)
chr8 (758-804)||(31410898-31410944)
chr8 (757-804)||(1042805-1042852)
chr8 (757-804)||(7107530-7107577)
chr8 (757-804)||(8072538-8072585)
chr8 (769-804)||(26014944-26014979)
chr8 (439-489)||(12883127-12883177)
[»] chr5 (9 HSPs)
chr5 (439-494)||(29429618-29429673)
chr5 (440-490)||(29429556-29429606)
chr5 (757-804)||(16285936-16285983)
chr5 (436-489)||(29855458-29855511)
chr5 (439-494)||(6818584-6818639)
chr5 (757-804)||(10044249-10044296)
chr5 (440-490)||(36187525-36187575)
chr5 (767-804)||(5610-5647)
chr5 (437-494)||(141317-141374)
[»] chr2 (9 HSPs)
chr2 (757-804)||(33830319-33830366)
chr2 (436-494)||(929031-929089)
chr2 (728-804)||(45075653-45075729)
chr2 (757-804)||(30326131-30326178)
chr2 (757-804)||(9374057-9374104)
chr2 (757-804)||(14776301-14776348)
chr2 (757-800)||(32227464-32227507)
chr2 (442-481)||(34806211-34806250)
chr2 (436-478)||(2788427-2788471)
[»] chr4 (17 HSPs)
chr4 (728-804)||(53039480-53039556)
chr4 (757-804)||(32318544-32318591)
chr4 (439-483)||(48809865-48809909)
chr4 (757-804)||(22409428-22409475)
chr4 (757-804)||(30538025-30538072)
chr4 (439-494)||(50685601-50685656)
chr4 (757-805)||(18995265-18995313)
chr4 (760-804)||(41069097-41069141)
chr4 (443-494)||(13529361-13529412)
chr4 (439-494)||(14112276-14112330)
chr4 (757-804)||(17268874-17268921)
chr4 (757-804)||(24010287-24010334)
chr4 (757-804)||(26533189-26533236)
chr4 (439-482)||(40227654-40227697)
chr4 (436-494)||(3527885-3527943)
chr4 (758-804)||(10109249-10109295)
chr4 (445-494)||(48546338-48546387)
[»] chr3 (14 HSPs)
chr3 (439-494)||(43271653-43271708)
chr3 (442-494)||(23071973-23072025)
chr3 (757-804)||(43310371-43310418)
chr3 (757-804)||(50524339-50524386)
chr3 (439-494)||(54362039-54362094)
chr3 (758-804)||(36923606-36923652)
chr3 (439-479)||(32737831-32737871)
chr3 (439-494)||(9762755-9762810)
chr3 (757-804)||(37238865-37238912)
chr3 (439-494)||(37311652-37311707)
chr3 (440-479)||(41666924-41666963)
chr3 (757-804)||(50699815-50699862)
chr3 (757-804)||(52915555-52915602)
chr3 (439-494)||(53683946-53684001)
[»] chr1 (15 HSPs)
chr1 (757-804)||(5198822-5198869)
chr1 (757-804)||(38788946-38788993)
chr1 (436-494)||(3150657-3150715)
chr1 (436-494)||(29867033-29867091)
chr1 (444-494)||(37316136-37316186)
chr1 (757-804)||(8550391-8550438)
chr1 (436-494)||(49044700-49044758)
chr1 (757-804)||(3491511-3491558)
chr1 (757-804)||(4051697-4051744)
chr1 (769-804)||(25409666-25409701)
chr1 (436-479)||(47206737-47206780)
chr1 (757-804)||(47588487-47588534)
chr1 (771-802)||(48022756-48022787)
chr1 (758-804)||(5467196-5467242)
chr1 (771-804)||(21276639-21276672)
[»] chr7 (11 HSPs)
chr7 (727-804)||(38652730-38652807)
chr7 (442-494)||(37708542-37708594)
chr7 (439-494)||(48723328-48723383)
chr7 (728-804)||(21148390-21148466)
chr7 (443-494)||(9658337-9658388)
chr7 (440-479)||(11698390-11698429)
chr7 (757-804)||(39854189-39854236)
chr7 (774-804)||(11667042-11667072)
chr7 (440-494)||(29724371-29724425)
chr7 (438-492)||(32854262-32854316)
chr7 (771-804)||(38073671-38073704)
[»] scaffold0121 (1 HSPs)
scaffold0121 (438-494)||(34012-34068)
[»] scaffold0154 (1 HSPs)
scaffold0154 (757-804)||(36431-36478)
[»] chr6 (3 HSPs)
chr6 (439-494)||(7509736-7509791)
chr6 (771-804)||(17506462-17506495)
chr6 (771-804)||(34396211-34396244)
[»] scaffold0524 (1 HSPs)
scaffold0524 (758-804)||(1506-1552)
[»] scaffold0102 (1 HSPs)
scaffold0102 (728-804)||(21233-21309)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 7605040 - 7605528
Alignment:
Q  8 ttttgagggaacaatacaaagtaagttaaaacaagtttataattctcgaccgaaattgatataatggttagaccttatgttccgttgatac-aattcttt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||  || ||| |||  ||||||||    
T  7605040 ttttgagggaacaatacaaagtaagttaaaacaagtttataattctcgaccgaaattgatataatggttataactcatagtc-gtttatagtaattcttt 7605138  T
Q  107 agcttgcatcaactatgagttaggattatcgcttgaaatttaagtaaatttcaatattttttagggaaagtaaatttcattgttaatcttaacgaatttg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  7605139 agcttgcatcaactatgagttaggattatcgcttgaaatttaagtaaatttcaatattttttagggaaagtaaatttcatttttaatctcaacgaatttg 7605238  T
Q  207 gtggttctcggtgactttgcatcagttgtatcttccatcatatgaattctttatgataaagnnnnnnnnttatgattaacaacttgtattattattttgc 306  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  7605239 gtggttctcggtgactttgcataagttgtatattccatcatatgaattctttatgataaagaaaaaaaattatgattaacaacttgtattattattttgc 7605338  T
Q  307 ttttaacaagcatgattatttnnnnnnnnnnnnnnnncagttttgataattaatattagaatatagtttctactactatataatacctgaaaag--taag 404  Q
    |||||||||||||||| ||||                |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  7605339 ttttaacaagcatgatcatttaaaataaaataaaaaacagttttgataattaatattagaatatagtttctactactatataataactgaaaagtataag 7605438  T
Q  405 tctatagtattttttagggaaatattaacttagacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||| ||||| ||||    
T  7605439 tctatagtattttttagggaaatgttaacttagactcaaattaatgagtcaaaagtggaaatattttgttgaaataaatgcatttaaatt 7605528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 656 - 727
Target Start/End: Original strand, 7605706 - 7605777
Alignment:
Q  656 aaaaatgtttggaagaaagaaacagaaacgaaacttggcgtgagtctcgtgtgaagtcaataatacaatttt 727  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7605706 aaaaatgtttggaagaaagaaacaaaaacgaaacttggcgtgagtctcgtgtgaagtcaataatacaatttt 7605777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 728 - 804
Target Start/End: Original strand, 17867442 - 17867518
Alignment:
Q  728 aaatgttaacttgtgtttttaagattcacgttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||| ||||||  |||||   || ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  17867442 aaatgttaatttgtgtccttaaggcacatgttaagaatttcattaatagaaattatgtatcggaaattgtgttaatt 17867518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 37456160 - 37456113
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||    
T  37456160 gttaagaattccactaatagaaattatgtattggaaattgtgttaatt 37456113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 758 - 804
Target Start/End: Original strand, 31410898 - 31410944
Alignment:
Q  758 ttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  31410898 ttaagaattctattaatagtaattatttattggaaattgtgttaatt 31410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 1042852 - 1042805
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||| ||||| | ||||||||||||||||||| ||||||||||||||    
T  1042852 gttaaaaatttcactaatagaaattatgtattgaaaattgtgttaatt 1042805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 7107577 - 7107530
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  7107577 gttaagaattccactaatagaaattatgtattggaaattgtgtaaatt 7107530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 8072585 - 8072538
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||||| ||||||||||||||    
T  8072585 gttaagaattccactaatagaaattatgtattgaaaattgtgttaatt 8072538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 804
Target Start/End: Complemental strand, 26014979 - 26014944
Alignment:
Q  769 attaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||||||||||| |||||||||||    
T  26014979 attaatagaaattatgtattggaatttgtgttaatt 26014944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 439 - 489
Target Start/End: Complemental strand, 12883177 - 12883127
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacattt 489  Q
    ||||||||||||||| | ||||||||||| ||||||||||| ||| |||||    
T  12883177 cacaagttaatgagttataagtgaaaataatttgttgtaattaatgcattt 12883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 29429618 - 29429673
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  29429618 cacaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatt 29429673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 490
Target Start/End: Original strand, 29429556 - 29429606
Alignment:
Q  440 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttg 490  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  29429556 acaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttg 29429606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 16285983 - 16285936
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  16285983 gttaagaatttcattaatagaaattatgcattgaaaattgtgttaatt 16285936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 29855511 - 29855458
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacattt 489  Q
    |||||||||| ||||||||||| || |||||||||||||||||| ||| |||||    
T  29855511 agacacaagtaaatgagtcaaatgtaaaaatattttgttgtaattaatgcattt 29855458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 6818584 - 6818639
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||| |||| |||||||| ||||||||||| |||  |||||||||    
T  6818584 cacaagttaatgagttaaaaatgaaaataatttgttgtaatcaatgtatttgaatt 6818639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 10044296 - 10044249
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||| | ||||||||||||||||||||| || |||||||||||    
T  10044296 gttaagaatgtcattaatagaaattatgtattgaaagttgtgttaatt 10044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 490
Target Start/End: Original strand, 36187525 - 36187575
Alignment:
Q  440 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttg 490  Q
    |||||||||||| | |||||| |||||||||||||||||| ||| ||||||    
T  36187525 acaagttaatgaattaaaagtaaaaatattttgttgtaattaatgcatttg 36187575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 804
Target Start/End: Complemental strand, 5647 - 5610
Alignment:
Q  767 ttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  5647 ttattaatagaaattacgtattgaaaattgtgttaatt 5610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 141317 - 141374
Alignment:
Q  437 gacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||||  ||||||| |||||  |||||||||| ||| ||||||||||    
T  141317 gacacaagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatt 141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 33830366 - 33830319
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33830366 gttaagaattttactaatagaaattatgtattggaaattgtgttaatt 33830319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 929031 - 929089
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||| |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  929031 agacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatt 929089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 728 - 804
Target Start/End: Original strand, 45075653 - 45075729
Alignment:
Q  728 aaatgttaacttgtgtttttaagattcacgttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||| |||||| |||| ||| || ||||| ||||| | ||||| ||||||||||||| ||||||||||||||    
T  45075653 aaatgttaatttgtgtctttaggatacatgttaaaaatttcactaatataaattatgtattgaaaattgtgttaatt 45075729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 30326178 - 30326131
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  30326178 gttaagaatttcattaagagaaattatgtattgaaaattgtgttaatt 30326131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Original strand, 9374057 - 9374104
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||||||    
T  9374057 gttaaaaatttcattaacagaaattatgtattggaaattgttttaatt 9374104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Original strand, 14776301 - 14776348
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||||||    
T  14776301 gttaagaattttaatattagtaattatgtattgaaaattgtgttaatt 14776348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 800
Target Start/End: Original strand, 32227464 - 32227507
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgtt 800  Q
    |||||||||| || ||||||||||||||||||| ||||||||||    
T  32227464 gttaagaattctactaatagaaattatgtattgaaaattgtgtt 32227507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 481
Target Start/End: Original strand, 34806211 - 34806250
Alignment:
Q  442 aagttaatgagtcaaaagtgaaaatattttgttgtaataa 481  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  34806211 aagttaatgagtcaaaaatgaaaatattttattgtaataa 34806250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 2788427 - 2788471
Alignment:
Q  436 agacacaagttaatg--agtcaaaagtgaaaatattttgttgtaa 478  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||    
T  2788427 agacacaagttaatgtgagtcaaaagtgaaaatattttattgtaa 2788471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 728 - 804
Target Start/End: Complemental strand, 53039556 - 53039480
Alignment:
Q  728 aaatgttaacttgtgtttttaagattcacgttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||||| | ||||| | || ||||||||||| | |||||||||||||||||||  |||||||||||||    
T  53039556 aaatgttaacttgtgctcttaaggtacatgttaagaatttcactaatagaaattatgtattgataattgtgttaatt 53039480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 757 - 804
Target Start/End: Original strand, 32318544 - 32318591
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32318544 gttaagaatttcattaatagaaattatgtattgaaaattgtgttaatt 32318591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 483
Target Start/End: Original strand, 48809865 - 48809909
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaat 483  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  48809865 cacaagttaatgagtctaaagtgaaaatattttgttataataaat 48809909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 22409475 - 22409428
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||    
T  22409475 gttaagaattctactaatagaaatcatgtattggaaattgtgttaatt 22409428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 30538072 - 30538025
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  30538072 gttaagaattccattaatagaaattatgtattgaaaattgtgttaatt 30538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 50685601 - 50685656
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||  |||||||||    
T  50685601 cacaagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatt 50685656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 757 - 805
Target Start/End: Complemental strand, 18995313 - 18995265
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatta 805  Q
    |||||||||| || ||||||||||||||||| | |||||||||||||||    
T  18995313 gttaagaattctactaatagaaattatgtatcgaaaattgtgttaatta 18995265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 804
Target Start/End: Complemental strand, 41069141 - 41069097
Alignment:
Q  760 aagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||    
T  41069141 aagaattttactaatagaaattatgttttgaaaattgtgttaatt 41069097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 494
Target Start/End: Original strand, 13529361 - 13529412
Alignment:
Q  443 agttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||||||  |||| |||||||||||| ||| ||||||||||    
T  13529361 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatt 13529412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 14112330 - 14112276
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||| |||||| | ||||||||| |||||| ||||||||||||||    
T  14112330 cacaagttaatgagttaaaagt-ataatattttgctgtaatcaatacatttgaatt 14112276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 17268921 - 17268874
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| |||||||||||||||||| | ||| ||||||||||||    
T  17268921 gttaagaattctattaatagaaattatgtctcggagattgtgttaatt 17268874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 24010334 - 24010287
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||||| ||||||||||||||    
T  24010334 gttaagaattccactaatagaaattatgtattgaaaattgtgttaatt 24010287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 26533236 - 26533189
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  26533236 gttaagaattccactaatagaaattatgtatcggaaattgtgttaatt 26533189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 482
Target Start/End: Complemental strand, 40227697 - 40227654
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaa 482  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||    
T  40227697 cacaagttaatgaggcaaaagtggaaataatttgttgtaataaa 40227654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 3527885 - 3527943
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||| ||| |||| |||||  ||||||||||||||||| ||| ||||||||||    
T  3527885 agacacaagtcaataagtccaaagtagaaatattttgttgtaatcaatgcatttgaatt 3527943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 758 - 804
Target Start/End: Original strand, 10109249 - 10109295
Alignment:
Q  758 ttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||  | ||||||||||||||||||| ||||||||||||||    
T  10109249 ttaagaattccactaatagaaattatgtattgaaaattgtgttaatt 10109295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 48546387 - 48546338
Alignment:
Q  445 ttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||| ||||||  ||||||| |||| |||||||||||||||||||    
T  48546387 ttaatgagttaaaagtagaaatattgtgttataataaatacatttgaatt 48546338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 43271653 - 43271708
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||    
T  43271653 cacaagttaatgaatcaaaagtggaaatattctgttgtaataaatgcatttgaatt 43271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 494
Target Start/End: Complemental strand, 23072025 - 23071973
Alignment:
Q  442 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||    
T  23072025 aagttaatgagccaaaagtgaaaatattttattgtaattaatgcatttgaatt 23071973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Original strand, 43310371 - 43310418
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| || ||||||||||| ||||||||||||||||||||||    
T  43310371 gttaagaattctactaatagaaattttgtattggaaattgtgttaatt 43310418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 50524386 - 50524339
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| |||||| | ||||||||||||||||||||||||||||    
T  50524386 gttaagaattctattaacaaaaattatgtattggaaattgtgttaatt 50524339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 54362039 - 54362094
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||| ||||||||||    
T  54362039 cacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatt 54362094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 758 - 804
Target Start/End: Complemental strand, 36923652 - 36923606
Alignment:
Q  758 ttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||    
T  36923652 ttaagaattccactaatagaaattatgtattggaaattgtgttaatt 36923606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 479
Target Start/End: Complemental strand, 32737871 - 32737831
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaat 479  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  32737871 cacaagttaatgagtcaaaaatgaaaataatttgttgtaat 32737831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 9762810 - 9762755
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||| ||||||||||||||||  ||||||||| ||||||| ||| ||||||||||    
T  9762810 cacaaattaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 9762755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 37238912 - 37238865
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  ||||||||||||||| | ||||||||||||||||||    
T  37238912 gttaagaattccattaatagaaattattttttggaaattgtgttaatt 37238865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 37311652 - 37311707
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||||||| |||||||  ||||| ||||||||||| ||| ||||||||||    
T  37311652 cacaagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatt 37311707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 479
Target Start/End: Original strand, 41666924 - 41666963
Alignment:
Q  440 acaagttaatgagtcaaaagtgaaaatattttgttgtaat 479  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  41666924 acaagttaatgagtcaaaagtaaaaatattttattgtaat 41666963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 50699862 - 50699815
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | |||||||||| |||||||||||||||||||||||    
T  50699862 gttaagaattccactaatagaaatcatgtattggaaattgtgttaatt 50699815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 52915602 - 52915555
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  52915602 gttaagaatttcattaatagaagttatgcattgaaaattgtgttaatt 52915555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 53683946 - 53684001
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||||||| |||||||||||||| |||||| |||| |||  |||||||||    
T  53683946 cacaagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatt 53684001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 757 - 804
Target Start/End: Original strand, 5198822 - 5198869
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||    
T  5198822 gttaagaattctactaatagaaattatgtattggaaattgtgttaatt 5198869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 38788993 - 38788946
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38788993 gttaagaattttactaatagtaattatgtattggaaattgtgttaatt 38788946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 3150657 - 3150715
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||||||  ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3150657 agacacaagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatt 3150715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 494
Target Start/End: Complemental strand, 29867091 - 29867033
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||| ||||||| || ||||||||  ||||||||||||||||||||||||||||||||    
T  29867091 agacataagttaacgaatcaaaagtagaaatattttgttgtaataaatacatttgaatt 29867033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 444 - 494
Target Start/End: Original strand, 37316136 - 37316186
Alignment:
Q  444 gttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  37316136 gttaatgagtcaaaagtgaaaataatttgttgtaattaatatatttgaatt 37316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 8550438 - 8550391
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||    
T  8550438 gttaagaattccactaatagaaattatgtattggaaattgtgttaatt 8550391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 49044700 - 49044758
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||| |||||||||||||||||||  ||||||||| ||||||| ||| ||||||||||    
T  49044700 agacataagttaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 49044758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 3491558 - 3491511
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | |||||||||||||||||||||||||||| |||||    
T  3491558 gttaagaattccactaatagaaattatgtattggaaattgtgataatt 3491511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 4051744 - 4051697
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  4051744 gttaagaattctactaatagaaattatatattgaaaattgtgttaatt 4051697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 804
Target Start/End: Complemental strand, 25409701 - 25409666
Alignment:
Q  769 attaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25409701 attaatagaaattatgtattgaaaattgtgttaatt 25409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 479
Target Start/End: Original strand, 47206737 - 47206780
Alignment:
Q  436 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaat 479  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  47206737 agacacaagttaatgagtcaaaaataaaaatactttgttgtaat 47206780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 47588534 - 47588487
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||||||    
T  47588534 gttaagaattctactaatagaaactatgtattgaaaattgtgttaatt 47588487  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 802
Target Start/End: Original strand, 48022756 - 48022787
Alignment:
Q  771 taatagaaattatgtattggaaattgtgttaa 802  Q
    ||||||||||||||||||||||||||||||||    
T  48022756 taatagaaattatgtattggaaattgtgttaa 48022787  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 758 - 804
Target Start/End: Complemental strand, 5467242 - 5467196
Alignment:
Q  758 ttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| ||| |||| |||||||||||||||||||||| ||||    
T  5467242 ttaagaatttcattgatagtaattatgtattggaaattgtgtgaatt 5467196  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 804
Target Start/End: Complemental strand, 21276672 - 21276639
Alignment:
Q  771 taatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||||||||| ||||||||||||||    
T  21276672 taatagaaattatgtattgaaaattgtgttaatt 21276639  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 804
Target Start/End: Complemental strand, 38652807 - 38652730
Alignment:
Q  727 taaatgttaacttgtgtttttaagattcacgttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||| ||||| |   || ||||||||||  | ||||||||||||||||||||||| ||||||||||    
T  38652807 taaatgttaacttgtgcttttagggcacatgttaagaattccactaatagaaattatgtattggaaagtgtgttaatt 38652730  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 494
Target Start/End: Complemental strand, 37708594 - 37708542
Alignment:
Q  442 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||| |||||||||||||  ||||||||||||||| ||||||||||    
T  37708594 aagttaatgagccaaaagtgaaaatgatttgttgtaataaatgcatttgaatt 37708542  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 48723383 - 48723328
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||||||||||||  |||||| ||||||||||||||||| ||| ||||||||||    
T  48723383 cacaagttaatgagtttaaagtggaaatattttgttgtaatgaatgcatttgaatt 48723328  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 804
Target Start/End: Original strand, 21148390 - 21148466
Alignment:
Q  728 aaatgttaacttgtgtttttaagattcacgttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||| ||||| ||||||||  || ||||||||||  | ||||| ||||||||||||| ||||||| ||||||    
T  21148390 aaatgttaagttgtgcttttaagacacatgttaagaattccactaataaaaattatgtattgaaaattgtattaatt 21148466  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 494
Target Start/End: Original strand, 9658337 - 9658388
Alignment:
Q  443 agttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||||||  |||| |||||||||||| ||| ||||||||||    
T  9658337 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatt 9658388  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 479
Target Start/End: Original strand, 11698390 - 11698429
Alignment:
Q  440 acaagttaatgagtcaaaagtgaaaatattttgttgtaat 479  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  11698390 acaagttaatgagtcaaaattaaaaatattttgttgtaat 11698429  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 39854236 - 39854189
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||| || ||||| ||||||||||||| ||||||||||||||    
T  39854236 gttaagaattctactaatataaattatgtattgaaaattgtgttaatt 39854189  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 774 - 804
Target Start/End: Original strand, 11667042 - 11667072
Alignment:
Q  774 tagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||||||||||||||||||    
T  11667042 tagaaattatgtattggaaattgtgttaatt 11667072  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 29724425 - 29724371
Alignment:
Q  440 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    |||||| ||| ||||||||||  ||||| ||||||||||||||| ||||||||||    
T  29724425 acaagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatt 29724371  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 438 - 492
Target Start/End: Original strand, 32854262 - 32854316
Alignment:
Q  438 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaa 492  Q
    |||||||||||||||| ||||||| ||||| |||||| |||| ||| ||||||||    
T  32854262 acacaagttaatgagttaaaagtggaaataatttgttctaatcaatgcatttgaa 32854316  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 804
Target Start/End: Complemental strand, 38073704 - 38073671
Alignment:
Q  771 taatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||||| |||||||||||||||    
T  38073704 taatagaaattatgtattagaaattgtgttaatt 38073671  T

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Target: scaffold0121 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 494
Target Start/End: Original strand, 34012 - 34068
Alignment:
Q  438 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||| ||||||||| |||||||||  ||||||| ||||||||||||||    
T  34012 acacaagttaatgcgtcaaaagtaaaaatatttcattgtaattaatacatttgaatt 34068  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 757 - 804
Target Start/End: Complemental strand, 36478 - 36431
Alignment:
Q  757 gttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||    
T  36478 gttaagaattccactaatagaaattatgtattggaaattgtgttaatt 36431  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 7509791 - 7509736
Alignment:
Q  439 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 494  Q
    ||||||||||||||||||||||  ||||||| ||||||||| ||| ||||||||||    
T  7509791 cacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaatt 7509736  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 804
Target Start/End: Original strand, 17506462 - 17506495
Alignment:
Q  771 taatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||||| |||||||||||||||    
T  17506462 taatagaaattatgtatttgaaattgtgttaatt 17506495  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 804
Target Start/End: Complemental strand, 34396244 - 34396211
Alignment:
Q  771 taatagaaattatgtattggaaattgtgttaatt 804  Q
    ||||||||||||||||||| ||||||||||||||    
T  34396244 taatagaaattatgtattgaaaattgtgttaatt 34396211  T

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Target: scaffold0524 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 758 - 804
Target Start/End: Complemental strand, 1552 - 1506
Alignment:
Q  758 ttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||    
T  1552 ttaagaattccattaatagaaattatgtatcggaaattgtgttaatt 1506  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 804
Target Start/End: Original strand, 21233 - 21309
Alignment:
Q  728 aaatgttaacttgtgtttttaagattcacgttaagaattttattaatagaaattatgtattggaaattgtgttaatt 804  Q
    |||||||||||||||  |||| ||  || ||||||||||  | ||||| ||||||| ||||||||||||||||||||    
T  21233 aaatgttaacttgtgcctttaggacacatgttaagaattccaataataaaaattatatattggaaattgtgttaatt 21309  T

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