View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1691-Insertion-6 (Length: 563)
Name: NF1691-Insertion-6
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1691-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Original strand, 41171290 - 41171835
Alignment:
| Q |
8 |
cagctatttagaaactaaaccaatcatatgcttagattaagattaaagttcagctatctaaaaattatgttaggaggcttacttttgaatctgttatcag |
107 |
Q |
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| T |
41171290 |
cagctatttagaaactaaaccaatcatatgcttagattaagattaaagttcagctatctaaaaattatgttaggaggcttacttttgaatctgttatcag |
41171389 |
T |
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| Q |
108 |
gtcacaaaaatgaaacttttattccaaggttcttaggccaatattgtaaaaagagatgggtaattttgactactattcttcggtagtttttgctcatttt |
207 |
Q |
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| T |
41171390 |
gtcacaaaaatgaaacttttattccaaggttcttaggccaatattgtaaaaagagatgggtaattttgactactattcttcggtagtttttgctcatttt |
41171489 |
T |
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| Q |
208 |
ggagtgggcccctcaatacacccttagttcttgaaatcagaccttattgctgggaccaccac-atattgctactttgactattcagcaaggtgcaattgt |
306 |
Q |
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| T |
41171490 |
ggagtgggcccctcaatacacccttagttcttgaaatcagaccttattgctgggaccaccactatattgctactttgactattcagcaaggtgcaattgt |
41171589 |
T |
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| Q |
307 |
atctaattttaggttatgcagatatttcgaaagtgtggttataatgtggattaccatgcactatcttgagttttcattgcaacattcattttcttgattg |
406 |
Q |
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| T |
41171590 |
atctaattttaggttatgcagatatttcgaaagtgtggttataatgtggatcaccatgcactatcttgagttttcattgcaacattcattttcttgattg |
41171689 |
T |
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| Q |
407 |
gatatgtaggacaacaaatttcctctcaaatcaatactgaatatttaatttacaaatgataacaataatcatattacttattaggtatagactaatttta |
506 |
Q |
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| T |
41171690 |
gatatgtaggacaacaaatttcctctcaaatcaatactgaatatttaatttacaaatgataacaataatcatattacttattaggtatagactaatttta |
41171789 |
T |
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| Q |
507 |
cttatgcgtattgcatccataccgcttatacataccagcttcataaaccaagttcat |
563 |
Q |
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| T |
41171790 |
ctt-----------atccataccgcttatacataccagcttcataaaccaagttcat |
41171835 |
T |
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Back To:
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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 38221340 - 38221268
Alignment:
| Q |
197 |
ttgctcattttggagtgggcccctcaatacaccctt-agttcttgaaatcagaccttattgctgggaccacca |
268 |
Q |
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| T |
38221340 |
ttgcccatcttggagtgggccccacaatacacccttcagttcttgaaatcagaccttattgctgggatcacca |
38221268 |
T |
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