View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1691-Insertion-7 (Length: 323)

Name: NF1691-Insertion-7
Description: NF1691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1691-Insertion-7
NF1691-Insertion-7
[»] chr5 (1 HSPs)
chr5 (7-323)||(7626281-7626597)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 7626597 - 7626281
Alignment:
Q  7 acgtacgtacggttagtgttgtcctaataaagtcctagacctaccttacacaaacgtgcgtctatgtagaccatagatattgagaggacgaaggagcatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7626597 acgtacgtacggttagtgttgtcctaataaagtcctagacctaccttacacaaacgtgcgtctatgtagaccatagatattgagaggacgaaggagcatc 7626498  T
Q  107 aaaaggaatacaaagaagattagaaagtgaaagttagcctaacatggaagctagctatataaatggcaaatataacctgacaaaaatttcatgatccggc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7626497 aaaaggaatacaaagaagattagaaagtgaaagttagcctaacatggaagctagctatataaatggcaaatataacctgacaaaaatttcatgatccggc 7626398  T
Q  207 gctattcacggttcaagcatgcatatattgccaaatcagtaaatatacttttgtacgcaccttaaatgttaatctcatctatatatataccactttaacg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7626397 gctattcacggttcaagcatgcatatattgccaaatcagtaaatatacttttgtacgcaccttaaatgttaatctcatctatatatataccactttaacg 7626298  T
Q  307 ttgacatcaataattga 323  Q
    |||||||||||||||||    
T  7626297 ttgacatcaataattga 7626281  T

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