View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16910_low_2 (Length: 335)
Name: NF16910_low_2
Description: NF16910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16910_low_2 |
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| [»] scaffold0687 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 151 - 328
Target Start/End: Original strand, 7594656 - 7594833
Alignment:
| Q |
151 |
caaaccaagcaatcagacataagtgattaaggaacttcatcaa-aggacaaatcgtataaaagaatcttgagtttaatttttaaattgaacaaatttttg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
7594656 |
caaaccaagcaatcagacataagtgattaaggaacttcatccagaggacaaatcgtttaaaagaatct-gagttcaatttttaaattgaacaaatttttg |
7594754 |
T |
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| Q |
250 |
ttagattatacttacctaacagacaaattctaaattactaagatcttcttcctctaggttaacaccaaaagaataatat |
328 |
Q |
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| T |
7594755 |
tcagattatacttatctaacggacaaactctaaattactaagatcttcttcctctagattaacaccaaaaaaataatat |
7594833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 7594466 - 7594596
Alignment:
| Q |
19 |
aggggaccaccctataggtgatttgggcgcatcgctttcatttttctttcaacacgcgggacaatgtacaaccacattatgaagacttcaaaaccagcaa |
118 |
Q |
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| T |
7594466 |
aggggaccaccctataggttatttgggcgcatcgctttcatttttctttcaacacccgggacaatgtacaaccacattatgaagacttcaaaaccagcaa |
7594565 |
T |
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| Q |
119 |
cataagtggctacacttctttaaatgcaaaa |
149 |
Q |
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| T |
7594566 |
cataagtggctacacttctttaaatgcaaaa |
7594596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0687 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: scaffold0687
Description:
Target: scaffold0687; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 151 - 325
Target Start/End: Original strand, 4004 - 4178
Alignment:
| Q |
151 |
caaaccaagcaatcagacataagtgattaaggaacttcatcaa-aggacaaatcgtataaaagaatcttgagtttaatttttaaattgaacaaatttttg |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
4004 |
caaaccaagcaatcagacataagtgattaaggaacttcatccagaggacaaatcgtttaaaagaatct-gagttcaatttttaaattgaacaaatttttg |
4102 |
T |
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| Q |
250 |
ttagattatacttacctaacagacaaattctaaattactaagatcttcttcctctaggttaacaccaaaagaataa |
325 |
Q |
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| T |
4103 |
tcagattatacttatctaacggacaaactctaaattactaagatcttcttcctctagattaacaccaaaaaaataa |
4178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0687; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 3814 - 3944
Alignment:
| Q |
19 |
aggggaccaccctataggtgatttgggcgcatcgctttcatttttctttcaacacgcgggacaatgtacaaccacattatgaagacttcaaaaccagcaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3814 |
aggggaccaccctataggttatttgggcgcatcgctttcatttttctttcaacacccgggacaatgtacaaccacattatgaagacttcaaaaccagcaa |
3913 |
T |
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| Q |
119 |
cataagtggctacacttctttaaatgcaaaa |
149 |
Q |
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| T |
3914 |
cataagtggctacacttctttaaatgcaaaa |
3944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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