View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16911_low_2 (Length: 270)

Name: NF16911_low_2
Description: NF16911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16911_low_2
NF16911_low_2
[»] chr7 (29 HSPs)
chr7 (1-251)||(20924352-20924602)
chr7 (27-247)||(14927315-14927533)
chr7 (27-247)||(15350781-15350999)
chr7 (7-247)||(29545391-29545632)
chr7 (7-247)||(10037981-10038220)
chr7 (7-236)||(23082027-23082255)
chr7 (7-155)||(21261190-21261338)
chr7 (7-248)||(20992210-20992453)
chr7 (29-150)||(26132228-26132349)
chr7 (7-159)||(10280600-10280752)
chr7 (7-151)||(24902870-24903013)
chr7 (6-208)||(4459446-4459650)
chr7 (80-151)||(23960789-23960860)
chr7 (7-236)||(12326491-12326721)
chr7 (90-236)||(16207215-16207361)
chr7 (86-140)||(16221903-16221957)
chr7 (79-159)||(10661618-10661698)
chr7 (7-132)||(15507013-15507139)
chr7 (30-147)||(42636974-42637091)
chr7 (7-69)||(10661947-10662009)
chr7 (90-150)||(15438841-15438901)
chr7 (104-147)||(19295519-19295562)
chr7 (104-155)||(24814853-24814904)
chr7 (7-49)||(3801872-3801914)
chr7 (6-148)||(7585800-7585942)
chr7 (7-49)||(11520661-11520703)
chr7 (104-149)||(9567656-9567701)
chr7 (114-155)||(15709121-15709162)
chr7 (103-144)||(30226816-30226857)
[»] chr6 (41 HSPs)
chr6 (7-247)||(15930099-15930339)
chr6 (48-236)||(23881990-23882178)
chr6 (5-247)||(29252927-29253173)
chr6 (7-160)||(12385109-12385262)
chr6 (87-166)||(19598430-19598509)
chr6 (101-251)||(25806072-25806222)
chr6 (3-150)||(17235359-17235507)
chr6 (6-238)||(24564392-24564623)
chr6 (7-159)||(13196080-13196233)
chr6 (14-243)||(17863731-17863961)
chr6 (7-150)||(9280960-9281104)
chr6 (5-247)||(20653737-20653981)
chr6 (16-147)||(12038968-12039101)
chr6 (90-150)||(21722742-21722802)
chr6 (75-150)||(23879650-23879726)
chr6 (7-150)||(19077908-19078048)
chr6 (7-162)||(26964805-26964959)
chr6 (77-150)||(19893988-19894062)
chr6 (105-155)||(34639555-34639605)
chr6 (104-245)||(11961140-11961280)
chr6 (72-148)||(13869717-13869794)
chr6 (103-151)||(19658683-19658731)
chr6 (7-150)||(33666556-33666698)
chr6 (101-236)||(8465012-8465147)
chr6 (100-159)||(11992365-11992424)
chr6 (72-150)||(25970442-25970521)
chr6 (72-150)||(25974882-25974961)
chr6 (7-159)||(20989040-20989193)
chr6 (104-237)||(24542332-24542465)
chr6 (104-152)||(20764351-20764399)
chr6 (104-155)||(21316941-21316992)
chr6 (14-69)||(24542683-24542738)
chr6 (7-159)||(19168202-19168355)
chr6 (74-131)||(20465230-20465288)
chr6 (181-247)||(20465319-20465385)
chr6 (101-235)||(21705875-21706009)
chr6 (7-84)||(17868220-17868297)
chr6 (106-159)||(17868275-17868328)
chr6 (7-84)||(17878003-17878080)
chr6 (106-159)||(17878058-17878111)
chr6 (14-59)||(23880948-23880993)
[»] chr2 (10 HSPs)
chr2 (14-210)||(21531083-21531279)
chr2 (7-235)||(15329001-15329228)
chr2 (7-159)||(21249448-21249601)
chr2 (76-150)||(24789478-24789553)
chr2 (104-155)||(27108203-27108254)
chr2 (104-155)||(27111792-27111843)
chr2 (105-155)||(36397839-36397889)
chr2 (7-56)||(23759484-23759533)
chr2 (104-149)||(24311201-24311246)
chr2 (7-49)||(12911359-12911401)
[»] chr5 (18 HSPs)
chr5 (14-247)||(20714001-20714233)
chr5 (7-247)||(26037446-26037686)
chr5 (7-148)||(22081942-22082083)
chr5 (7-247)||(38406029-38406269)
chr5 (7-210)||(18221814-18222018)
chr5 (9-135)||(23419809-23419936)
chr5 (7-149)||(23624607-23624749)
chr5 (7-155)||(13941266-13941414)
chr5 (7-130)||(26328467-26328590)
chr5 (94-247)||(30605029-30605182)
chr5 (6-147)||(23757506-23757648)
chr5 (6-147)||(23822962-23823104)
chr5 (7-150)||(22251291-22251435)
chr5 (6-144)||(22404010-22404149)
chr5 (6-148)||(24190630-24190773)
chr5 (104-155)||(22183666-22183717)
chr5 (7-49)||(22240228-22240270)
chr5 (101-149)||(20127705-20127753)
[»] chr3 (27 HSPs)
chr3 (7-247)||(286151-286388)
chr3 (106-247)||(21253347-21253488)
chr3 (104-248)||(17042108-17042246)
chr3 (7-132)||(21547566-21547692)
chr3 (14-135)||(28051918-28052040)
chr3 (7-155)||(3551731-3551878)
chr3 (19-158)||(6578812-6578951)
chr3 (14-247)||(18063464-18063698)
chr3 (9-155)||(979634-979780)
chr3 (2-247)||(13514863-13515110)
chr3 (7-69)||(6578572-6578634)
chr3 (6-150)||(17135394-17135539)
chr3 (72-135)||(20626958-20627022)
chr3 (7-150)||(24196290-24196434)
chr3 (104-155)||(214443-214494)
chr3 (5-64)||(296248-296307)
chr3 (105-155)||(18477854-18477904)
chr3 (90-236)||(18482707-18482853)
chr3 (7-61)||(28052189-28052243)
chr3 (105-149)||(8225849-8225893)
chr3 (5-49)||(23953806-23953850)
chr3 (104-155)||(25020156-25020207)
chr3 (7-49)||(7028321-7028363)
chr3 (181-235)||(7028496-7028550)
chr3 (7-49)||(15572256-15572298)
chr3 (14-64)||(21253300-21253349)
chr3 (100-149)||(15674182-15674231)
[»] chr8 (11 HSPs)
chr8 (7-236)||(18622340-18622566)
chr8 (72-248)||(27924768-27924945)
chr8 (14-247)||(33962401-33962632)
chr8 (7-241)||(26536961-26537196)
chr8 (19-247)||(9997166-9997392)
chr8 (14-247)||(33977727-33977958)
chr8 (72-236)||(23540722-23540887)
chr8 (7-59)||(9997580-9997632)
chr8 (7-151)||(20254128-20254272)
chr8 (108-149)||(23250483-23250524)
chr8 (72-132)||(45136893-45136954)
[»] scaffold1001 (1 HSPs)
scaffold1001 (19-239)||(639-858)
[»] chr4 (31 HSPs)
chr4 (5-149)||(15699585-15699729)
chr4 (7-236)||(19182933-19183164)
chr4 (7-135)||(10724977-10725106)
chr4 (7-135)||(10938746-10938875)
chr4 (7-122)||(15161753-15161869)
chr4 (19-159)||(9069700-9069840)
chr4 (7-135)||(15623216-15623344)
chr4 (104-245)||(33746588-33746731)
chr4 (105-155)||(49975008-49975058)
chr4 (7-150)||(18600910-18601054)
chr4 (7-208)||(16384597-16384799)
chr4 (104-223)||(33744163-33744282)
chr4 (105-155)||(10718235-10718285)
chr4 (105-155)||(10932004-10932054)
chr4 (105-155)||(10683007-10683057)
chr4 (105-155)||(10896647-10896697)
chr4 (7-85)||(33744496-33744574)
chr4 (102-155)||(41786193-41786246)
chr4 (7-60)||(41786278-41786331)
chr4 (9-69)||(10723323-10723383)
chr4 (9-69)||(10937092-10937152)
chr4 (104-155)||(10197596-10197647)
chr4 (14-69)||(10683272-10683327)
chr4 (14-69)||(10896912-10896967)
chr4 (105-155)||(10723047-10723097)
chr4 (105-155)||(10936816-10936866)
chr4 (181-247)||(15161909-15161975)
chr4 (103-144)||(11905837-11905878)
chr4 (7-150)||(23399446-23399590)
chr4 (102-135)||(25117636-25117669)
chr4 (103-151)||(32862408-32862456)
[»] chr1 (24 HSPs)
chr1 (14-247)||(1626241-1626474)
chr1 (14-251)||(23477194-23477430)
chr1 (7-150)||(25349480-25349623)
chr1 (72-247)||(17850743-17850918)
chr1 (7-163)||(10339410-10339566)
chr1 (7-241)||(11667153-11667388)
chr1 (104-247)||(12753728-12753871)
chr1 (7-150)||(20200339-20200483)
chr1 (7-147)||(24986751-24986892)
chr1 (7-150)||(4246803-4246949)
chr1 (6-150)||(20840513-20840658)
chr1 (7-69)||(17838230-17838292)
chr1 (75-150)||(26971716-26971792)
chr1 (7-69)||(15803465-15803527)
chr1 (14-155)||(41330640-41330781)
chr1 (181-247)||(15803562-15803628)
chr1 (100-150)||(22891145-22891195)
chr1 (75-150)||(9452171-9452247)
chr1 (75-150)||(13150057-13150133)
chr1 (104-155)||(8282680-8282731)
chr1 (104-155)||(51471439-51471490)
chr1 (7-85)||(12759297-12759375)
chr1 (7-49)||(13166261-13166303)
chr1 (105-155)||(22347972-22348022)
[»] scaffold0213 (1 HSPs)
scaffold0213 (7-236)||(7829-8059)
[»] scaffold0226 (3 HSPs)
scaffold0226 (7-150)||(17375-17519)
scaffold0226 (7-150)||(26769-26913)
scaffold0226 (7-247)||(6789-7029)
[»] scaffold0035 (1 HSPs)
scaffold0035 (5-135)||(38085-38215)
[»] scaffold0103 (1 HSPs)
scaffold0103 (7-150)||(24928-25072)
[»] scaffold0190 (1 HSPs)
scaffold0190 (92-247)||(15957-16112)
[»] scaffold0185 (1 HSPs)
scaffold0185 (72-150)||(1683-1762)
[»] scaffold0259 (1 HSPs)
scaffold0259 (72-159)||(16641-16729)
[»] scaffold0129 (1 HSPs)
scaffold0129 (102-150)||(16270-16318)
[»] scaffold0088 (1 HSPs)
scaffold0088 (72-150)||(37355-37434)
[»] scaffold0008 (1 HSPs)
scaffold0008 (7-88)||(36568-36649)
[»] scaffold0520 (2 HSPs)
scaffold0520 (104-155)||(5727-5778)
scaffold0520 (104-155)||(11982-12033)
[»] scaffold0064 (1 HSPs)
scaffold0064 (104-155)||(45316-45367)
[»] scaffold0059 (1 HSPs)
scaffold0059 (76-150)||(47710-47785)
[»] scaffold0006 (1 HSPs)
scaffold0006 (100-150)||(88511-88561)
[»] scaffold0453 (1 HSPs)
scaffold0453 (75-150)||(1319-1395)
[»] scaffold0069 (1 HSPs)
scaffold0069 (90-150)||(9439-9499)
[»] scaffold0359 (1 HSPs)
scaffold0359 (7-49)||(2756-2798)
[»] scaffold0480 (1 HSPs)
scaffold0480 (104-149)||(11946-11991)
[»] scaffold0034 (1 HSPs)
scaffold0034 (104-149)||(50258-50303)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 20924352 - 20924602
Alignment:
Q  1 gagaactgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20924352 gagaactgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaagatgtaatgtttcaacatggttcaggcatctccg 20924451  T
Q  101 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20924452 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccata 20924551  T
Q  201 tttccttatcatgctgaccaagctacgcgcatatctgtacataatcaattg 251  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20924552 tttccttatcttgctgaccaagctacgcgcatatctgtacataatcaattg 20924602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 14927533 - 14927315
Alignment:
Q  27 tgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgatgttccaac 126  Q
    |||||| ||| |||||||||||| |||||||||||||| ||||  |||||| ||||||| ||||| ||||||  ||||||||||||||||||||||||||    
T  14927533 tgcattattgctaaaacaaatatccatgtttgtgttgttggatacaatgttccaacatgtttcagacatctctttaagatgttggatacgatgttccaac 14927434  T
Q  127 atcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatgctgaccaagctac 226  Q
    ||||||||| | || |||||||||||| ||||||| |||| | |||  || || ||||||||||||||||||||||| |||||| |  ||||||||| ||    
T  14927433 atcctggcacggtttagtgtgccttgtatcatgtcggtttgtacgcgcgccttttattatttaaggaaaccatattttcttatctt--tgaccaagcaac 14927336  T
Q  227 gcgcatatctgtacataatca 247  Q
     ||||||||| |||| |||||    
T  14927335 acgcatatctttacagaatca 14927315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 15350999 - 15350781
Alignment:
Q  27 tgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgatgttccaac 126  Q
    |||||| ||| |||||||||||| |||||||||||||| ||||  |||||| ||||||| ||||| ||||||  ||||||||||||||||||||||||||    
T  15350999 tgcattattgctaaaacaaatatccatgtttgtgttgttggatacaatgttccaacatgtttcagacatctctttaagatgttggatacgatgttccaac 15350900  T
Q  127 atcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatgctgaccaagctac 226  Q
    ||||||||| | || |||||||||||| ||||||| |||| | |||  || || ||||||||||||||||||||||| |||||| |  ||||||||| ||    
T  15350899 atcctggcacggtttagtgtgccttgtatcatgtcggtttgtacgcgcgccttttattatttaaggaaaccatattttcttatctt--tgaccaagcaac 15350802  T
Q  227 gcgcatatctgtacataatca 247  Q
     ||||||||| |||| |||||    
T  15350801 acgcatatctttacagaatca 15350781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 29545391 - 29545632
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    ||||||||||||||||||  || ||||||| ||||| |||||||| |||||||||||| |||  ||||||| ||||||| ||| ||||||||| ||||||    
T  29545391 tgttggatatttgtattggttgtattgttgctaaaataaatattcttgtttgtgttgttggaactaatgttccaacatgtgtttaggcatctctgtaaga 29545490  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    |||||||||| ||||||||||||||| ||| | ||||||||| || | |||||| || ||| | |||  ||  | |||| ||||||||||| ||||||||    
T  29545491 tgttggatacaatgttccaacatcctagcatggttcagtgtgtctgggttcatgcctatttgtacgcgcgccctttattgtttaaggaaacaatatttcc 29545590  T
Q  206 ttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
     |||| |  ||| ||||| ||| |||||||| |||| |||||    
T  29545591 gtatcttattgatcaagcaacgtgcatatctttacagaatca 29545632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 10037981 - 10038220
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||| |||  ||||||||||| ||||||||| |||| ||||   ||||| ||||||| || |||||| || |||||||    
T  10037981 tgttgggtatttgtattggctgcattattgcgaaaacaaatatccatgtttgtattgttggatactatgttccaacatgttttaggcatttctgtaagat 10038080  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
    ||||||||  |||||||||||| |||||| | ||||||||||||||||| ||| ||| || | |||| || |||| ||| |||||||| ||| ||   |     
T  10038081 gttggatataatgttccaacatactggcatggttcagtgtgccttgttttatgcctgattgtacgcacgctttatctta-ttaaggaatccacatcctca 10038179  T
Q  207 tatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||| ||||||||||||  ||||||||||||| || |||||    
T  10038180 tatcttgctgaccaagcaccgcgcatatctgttcagaatca 10038220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 23082027 - 23082255
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| |||| ||||| ||| |||    ||||| ||||||| || |||||| || |||||||    
T  23082027 tgttgggtatttgtattggctgcattattgctaaaacaaatatccatgattgtgatgttggaaactatgttccaacatgttttaggcatttctgtaagat 23082126  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
    |||||||| |||||||||||||||||||| | ||||||||||||| ||| ||| ||| |||| |||  || |||| ||| |||||||| ||| |||  |     
T  23082127 gttggatatgatgttccaacatcctggcacggttcagtgtgccttattttatgcctgattatacgcgcgctttatctta-ttaaggaatccacattctca 23082225  T
Q  207 tatcatgctgaccaagctacgcgcatatct 236  Q
    |||| || ||| ||||| ||||||||||||    
T  23082226 tatcttgttgatcaagcaacgcgcatatct 23082255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 21261338 - 21261190
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||  ||| ||||| ||||||||||| ||||| ||| ||||   ||||| ||||||| || |||||| || |||||||    
T  21261338 tgttgggtatttgtattggctgcatcattgctaaaataaatattcatgattgtgatgttggatactatgttccaacatgttttaggcatttctgtaagat 21261239  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||| |||||||||||||||||||| | |||||||||||||||||    
T  21261238 gttggatatgatgttccaacatcctggcacggttcagtgtgccttgttt 21261190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 20992453 - 20992210
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | ||||| |||  || |||   | ||||| |||||  ||| ||||||||| |||||    
T  20992453 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttgtttatgtaagttggaaccagtgttttaacatttgtttaggcatctctgtaag 20992354  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttc 204  Q
    |||||||||| |||||||||||||||||||| | |||||||||||| | |||||| || ||| | |||   |  | |||| ||||||||||| |||||||    
T  20992353 atgttggatatgatgttccaacatcctggcacggttcagtgtgcctaggttcatgcctatttgtacgcgcactctttattgtttaaggaaacaatatttc 20992254  T
Q  205 cttatcatgctgaccaagctacgcgcatatctgtacataatcaa 248  Q
    |||||| |  ||||||||| |||||||||||| |||| ||||||    
T  20992253 cttatcttattgaccaagcaacgcgcatatctatacaaaatcaa 20992210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 26132228 - 26132349
Alignment:
Q  29 cattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgatgttccaacat 128  Q
    |||| ||| |||||||||||| |||||||||| | | ||||   ||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  26132228 cattattgctaaaacaaatatccatgtttgtgatattggatactatgttccaacatgtttcaggcatctctgtaagatgttggatatgatgttccaacat 26132327  T
Q  129 cctggcaagattcagtgtgcct 150  Q
    ||||||| | ||||||||||||    
T  26132328 cctggcacggttcagtgtgcct 26132349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 10280752 - 10280600
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||| ||||| |||||||| ||||   |||||  |||||| ||||||||| |  | || ||    
T  10280752 tgttgggtatttgtattggctgcattgttgctaaaataaatatccatgtctgtgttgttggatactatgttctaacatgtttcaggcatataagaaaaat 10280653  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    |||||||||||| ||||||||||||| || | ||||||||||||||| |||||    
T  10280652 gttggatacgatattccaacatcctgccacggttcagtgtgccttgtatcatg 10280600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 24903013 - 24902870
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||   ||||| ||||||| || |||||| ||    ||||    
T  24903013 tgttggatatttgtattggctgcattattggtaaaacaaatatccatgtttgtgatgttggatactatgttccaacatgttttaggcatttctacgagat 24902914  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgcctt 151  Q
    |||||||| |||||||||||||||| ||| | |||||||||||||    
T  24902913 gttggatatgatgttccaacatcct-gcacggttcagtgtgcctt 24902870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 4459650 - 4459446
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| ||||||| ||| ||| ||||||| |||||||||||| | ||||| |||  || |||   |||||| ||||||  ||| ||||||||| ||||    
T  4459650 ctgttgggtatttgtgttggctgtattgttgctaaaacaaatatccttgtttctgtaagttggaaccaatgttccaacatctgtttaggcatctctgtaa 4459551  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatattt 203  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||| | |||||| || ||| | |||  ||  | |||| |||| |||||| ||||||    
T  4459550 gatgttggatacaatgttccaacatcctagcacgattcagtgtgcctaggttcatgcctatttgtacgcgcgccctttattgtttatggaaacaatattt 4459451  T
Q  204 cctta 208  Q
    |||||    
T  4459450 cctta 4459446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 23960860 - 23960789
Alignment:
Q  80 aacatggttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcctt 151  Q
    |||||| || |||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23960860 aacatgttttaggcatttctgtaagatgttggatacgatgttccaacatcctggcacgattcagtgtgcctt 23960789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 12326721 - 12326491
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | || | ||||  || |||   || ||| ||||||| ||| |||||||||  ||||    
T  12326721 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttggt-gtgtaagttggaacaaaggttccaacatgtgtttaggcatctctataag 12326623  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttc 204  Q
    ||||||||||||||||||||||||||||||| | |||||||||| | | |||||| ||  || | |||   |  | |||| ||||||||||| |||||||    
T  12326622 atgttggatacgatgttccaacatcctggcacggttcagtgtgcatgggttcatgcctacttgtacgcgcactctttattgtttaaggaaacaatatttc 12326523  T
Q  205 cttatcatgctgaccaagctacgcgcatatct 236  Q
    |||||| |  ||||||||  ||||||||||||    
T  12326522 cttatcttattgaccaagaaacgcgcatatct 12326491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 16207215 - 16207361
Alignment:
Q  90 aggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattattta 189  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||| | |||||| ||  || | |||   |  | |||| ||||    
T  16207215 aggcatctctgtaagatgttggatatgatgttccaacatcctggcatggttcagtgtgcctgggttcatgcctacttgtacgcgcaccctttattgttta 16207314  T
Q  190 aggaaaccatatttccttatcatgctgaccaagctacgcgcatatct 236  Q
    ||||||| ||||||||||||| || ||| ||||| || | |||||||    
T  16207315 aggaaacaatatttccttatcttgttgatcaagcaacacacatatct 16207361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 16221903 - 16221957
Alignment:
Q  86 gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagatt 140  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  16221903 gttctggcatctctgtaagatgttggatacgatgttccaacatcctggcatgatt 16221957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 10661698 - 10661618
Alignment:
Q  79 caacatggttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    ||||||| || |||||| |  |||||||||||||||||||||||||||||||| ||| | ||||||||||||  |||||||    
T  10661698 caacatgttttaggcatttatgtaagatgttggatacgatgttccaacatcctagcacggttcagtgtgcctgatttcatg 10661618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 15507139 - 15507013
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | || | ||||  || |||   |||||| ||||||| ||| |||||||||  ||||    
T  15507139 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgat-gtgtaagttggaaccaatgttccaacatgtgtttaggcatctctataag 15507041  T
Q  105 atgttggatacgatgttccaacatcctg 132  Q
    |||||||||||||||||| |||||||||    
T  15507040 atgttggatacgatgttcaaacatcctg 15507013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 42637091 - 42636974
Alignment:
Q  30 attgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgatgttccaacatc 129  Q
    ||||||| |||||||||||  |||||||||  ||| |||| |||  |  ||||||| || | |||| || ||||||||||| ||||||||||||||| ||    
T  42637091 attgttgctaaaacaaatacccatgtttgtaatgttggatataagttgccaacatgttttaagcatttctgtaagatgttgaatacgatgttccaacgtc 42636992  T
Q  130 ctggcaagattcagtgtg 147  Q
    |||||| | |||||||||    
T  42636991 ctggcacggttcagtgtg 42636974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 10662009 - 10661947
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||    
T  10662009 tgttgggtatttgtattggctgcattattgctaaaacaaatatccatgtttgtgatgttggat 10661947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 15438901 - 15438841
Alignment:
Q  90 aggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||| ||||||||||||||||||||||  ||||||||| || | || |||||||||    
T  15438901 aggcatctctgtaagatgttggatacgatgtttaaacatcctgacacggttaagtgtgcct 15438841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 19295562 - 19295519
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtg 147  Q
    |||||||||||||||||||||||||| ||||| | |||||||||    
T  19295562 gatgttggatacgatgttccaacatcttggcacggttcagtgtg 19295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 24814904 - 24814853
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||| | ||||||| ||||| ||||||||||||| |||||    
T  24814904 gatgttggatacgatgcttcaacatcttggcacgattcagtgtgccctgttt 24814853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 3801914 - 3801872
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  3801914 tgttggctatttgtattggctgcattgttgctaaaacaaatat 3801872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 7585800 - 7585942
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaaga 105  Q
    |||| |||||||| | ||| ||||||| ||| |||||||||||| |||| ||||| ||| ||||   || || ||||||| || |||||| |   |||||    
T  7585800 ctgtcggatatttattttggctgcattattgctaaaacaaatatccatgattgtgatgttggatactattttccaacatgttttaggcatttttataaga 7585899  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgc 148  Q
    ||  ||||| ||||||||||| |||||| | | ||||||||||    
T  7585900 tgcgggatatgatgttccaacttcctggtacggttcagtgtgc 7585942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 11520661 - 11520703
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  11520661 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 11520703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 9567701 - 9567656
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    |||||||||||||||||||||||||||| |||   |||||||||||    
T  9567701 gatgttggatacgatgttccaacatcctagcacagttcagtgtgcc 9567656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 15709162 - 15709121
Alignment:
Q  114 acgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||| | ||||||||||| |||||    
T  15709162 acgatgttccaacatcctggcacggttcagtgtgccctgttt 15709121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 30226857 - 30226816
Alignment:
Q  103 agatgttggatacgatgttccaacatcctggcaagattcagt 144  Q
    |||||||||| ||||||| |||||||||||||| ||||||||    
T  30226857 agatgttggacacgatgtgccaacatcctggcatgattcagt 30226816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 15930099 - 15930339
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||  | ||| |||||||||||||||||||||||||||  |||  ||||||  |||||| |||||||||||| |||||||    
T  15930099 tgttgggtatttgtattggctgctatattgctaaaacaaatattcatgtttgtgttgtttgatacaatgttcaaacatgtttcaggcatctctgtaagat 15930198  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
     |||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||| | | |  || ||||| |||||||||||||||||||||||    
T  15930199 attggatacgatgttccaacatcctggcacggttcagtgtgccttgtttcatgcatgtttgtacacgcgccttatactatttaaggaaaccatatttcct 15930298  T
Q  207 tatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||| |  ||||||||| |||| ||||||| ||||||||||    
T  15930299 tatcttattgaccaagcaacgcacatatctttacataatca 15930339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 23881990 - 23882178
Alignment:
Q  48 attcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtg 147  Q
    ||||||||||||||||| ||||  |||||| | ||||  || ||||||||  ||||||||||||||||||||||||||||||||| || | |||||||||    
T  23881990 attcatgtttgtgttgttggatacaatgttcctacatattttaggcatctttgtaagatgttggatacgatgttccaacatcctgacacggttcagtgtg 23882089  T
Q  148 ccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatct 236  Q
    |||||||||||| |||||| | | | ||| ||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||    
T  23882090 ccttgtttcatgcctgtttgtacacgtgctttatattatttaaggaaaccatatttccttatcttattgaccaagcaacgcgcatatct 23882178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 29252927 - 29253173
Alignment:
Q  5 actgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaag 104  Q
    |||||||| ||||| ||||| ||| ||||||| |||||||||||| |||||||||| ||| |||   |||||| ||||||||||||||||| ||  ||||    
T  29252927 actgttgggtatttatattgactgtattgttgctaaaacaaatatccatgtttgtgatgttggaaccaatgttccaacatggttcaggcatgtctttaag 29253026  T
Q  105 atgttggat---acgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtt-tatgcgcatgcgttatattatttaaggaaaccata 200  Q
    |||||||||   |||||||||||||||||||||| | ||||||||||| ||| || ||  |||| | | |||  || | |||||||||||||||||| ||    
T  29253027 atgttggatacgacgatgttccaacatcctggcacggttcagtgtgccatgtatcttgcttgttatgtacgcgcgcctaatattatttaaggaaaccgta 29253126  T
Q  201 tttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||| |||||| |  ||||||||| |||||||||||| ||||| ||||    
T  29253127 ttttcttatcttattgaccaagcaacgcgcatatctttacatgatca 29253173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 12385109 - 12385262
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||| ||| ||||||||||||   ||||||| || | |||   |||||| ||||||| || ||||||||| |||||||    
T  12385109 tgttgggtatttgtattggctgcattattgctaaaacaaatatcattgtttgtattattggagacaatgttccaacatgttttaggcatctctgtaagat 12385208  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgt 160  Q
    ||||||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  12385209 gttggatacgatgttccaacatcctggcacggttcagtgtgcctgggttcatgt 12385262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 19598509 - 19598430
Alignment:
Q  87 ttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgttt 166  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||    
T  19598509 ttcaggcatctctgtaagatgttggatacgatgttccaacatcctgacacggttcagtgtgccttgtttcatgcctgttt 19598430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 25806222 - 25806072
Alignment:
Q  101 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccata 200  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| || | |||||| |||| | | ||  |||  |  ||| || |||||||| |||    
T  25806222 taagatgttggatacgatgttccaacatcctggcacggttcagtgtgtctgggttcatgcctgtatgtacgggtgccattcattgttgaaggaaacaata 25806123  T
Q  201 tttccttatcatgctgaccaagctacgcgcatatctgtacataatcaattg 251  Q
    |||||||||| |  ||||||||| |||||||||||| |||| |||||||||    
T  25806122 tttccttatcttattgaccaagcaacgcgcatatctctacagaatcaattg 25806072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 17235507 - 17235359
Alignment:
Q  3 gaactgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccg 100  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||   ||||| |||  || |||   |||||| ||||||| ||| |||| |||| |    
T  17235507 gaactgttgggtatttgtattgactgcattgttgctaaaacaaatatctttgttt-tgtaagttggaatcaatgttccaacatgtgtttaggcgtctctg 17235409  T
Q  101 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  17235408 taagatgttggatacgatgctccaacatcctggcacggttcagtgtgcct 17235359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 24564623 - 24564392
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaaga 105  Q
    ||||||||||||||||||| ||||||| ||| ||||| |||||| |||| || || ||| ||||   ||||| ||||||| || |||||| | |  | ||    
T  24564623 ctgttggatatttgtattggctgcatttttgctaaaataaatatccatgattatgatgttggataccatgttccaacatgttttaggcattttcacagga 24564524  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    ||||||||  ||||||| || ||||| ||| ||||||||||||||||||| ||| ||| || | |||  || |||| ||| |||||||| ||| ||   |    
T  24564523 tgttggatgtgatgttcaaatatcctagcacgattcagtgtgccttgttttatgcctgattgtacgcgcgctttatctta-ttaaggaatccacatcctc 24564425  T
Q  206 ttatcatgctgaccaagctacgcgcatatctgt 238  Q
     |||| |||||||||||| ||||||||||||||    
T  24564424 atatcttgctgaccaagcaacgcgcatatctgt 24564392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 13196233 - 13196080
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | ||||| |||  || |||   |||||| ||||||| ||| || ||||||  ||||    
T  13196233 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttgttt-tgtaagttggaaccaatgttccaacatgtgtttagacatctctataag 13196135  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| | ||||||    
T  13196134 atgttggatacgatgttccaacatcctggcacggttcagtgtgcctgggttcatg 13196080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 17863731 - 17863961
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaagatgttgga 112  Q
    ||||| ||||| ||||||||||| |||||||||||| | |||||||||||| |||   |||||| ||||||| ||| ||||||||| ||||||||| |||    
T  17863731 tatttctattggctgcattgttgctaaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatgtgtttaggcatctctgtaagatgtcgga 17863830  T
Q  113 tacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcat 212  Q
    || ||||||  |||||| | ||| | |||||  ||||| | |||||| || ||| | ||   ||  | |||| ||||||||||| ||||||||||||| |    
T  17863831 tatgatgttttaacatcgtagcacggttcagactgcctgggttcatgcctatttgtacgtgcgccctttattgtttaaggaaacaatatttccttatctt 17863930  T
Q  213 gctgaccaagctacgcgcatatctgtacata 243  Q
      ||||||| | |||| ||||||| ||||||    
T  17863931 attgaccaaacaacgcacatatctttacata 17863961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 9280960 - 9281104
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||| | || |||||||| |||||||||||||| ||||| |||  || |||   || ||||||||||| ||| |||| |||| | |||    
T  9280960 tgttgggtatttgtatcggctacattgttgctaaaacaaatattcttgttt-tgtaagttggaaccaaagtttcaacatgtgtttaggcgtctctgaaag 9281058  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||    
T  9281059 atgttggatatgatgctccaacatcctggcacgattcagtgtgcct 9281104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 20653981 - 20653737
Alignment:
Q  5 actgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgt-tgtaggatgtaatgtttcaacatg-gttcaggcatctccgta 102  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||| | | | |||||  || | |   |||||| ||||||| ||| |||||||||  ||    
T  20653981 actgttgggtatttgtattgtctgcattattgctaaaacaaatatccttatgtgtgtaagttgaaatcaatgttccaacatgtgtttaggcatctctata 20653882  T
Q  103 agatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatt 202  Q
    |||||||||||  |||||||||| ||||||| | | ||||||||| || | |||||| ||  || | |||  ||  | |||| ||||||||||| |||||    
T  20653881 agatgttggatgtgatgttccaagatcctggaacggttcagtgtgtctgggttcatgcctacttttacgcgcgccctttattgtttaaggaaacaatatt 20653782  T
Q  203 tccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||||||| |  ||| ||||| |||| ||||||| |||| |||||    
T  20653781 tccttatcttattgatcaagcaacgcacatatctttacagaatca 20653737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 12038968 - 12039101
Alignment:
Q  16 tttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaagatgttggat 113  Q
    ||||||||||||||||| ||| |||||||||||| | | | |||||  || | |  ||||||| ||||||| ||| ||||||||| ||||||||||||||    
T  12038968 tttgtattgtctgcattattgataaaacaaatatccttatgtgtgtaagttgaaattaatgttccaacatgtgtttaggcatctctgtaagatgttggat 12039067  T
Q  114 acgatgttccaacatcctggcaagattcagtgtg 147  Q
     | ||||||||||||| ||||| | |||||||||    
T  12039068 gcaatgttccaacatcttggcacggttcagtgtg 12039101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 21722742 - 21722802
Alignment:
Q  90 aggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  21722742 aggcaactctgtaagatgttggatacaatgttccaacatcctggcatggttcagtgtgcct 21722802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 23879726 - 23879650
Alignment:
Q  75 gtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||| ||| |||| |||| | |||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  23879726 gtttcaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcct 23879650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 19078048 - 19077908
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||| ||||||  |||||||||||||| || |     |||| | || || ||| ||||||| ||| |||||| |  ||||||    
T  19078048 tgttgggtatttgtattggctgaattgtttctaaaacaaatattcttgatg----tgtaagttggaacgttccaacatgtgtttaggcatgtttgtaaga 19077953  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||    
T  19077952 tgttggatacgatgttccaacatcttggcacggttcagtgtgcct 19077908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 26964805 - 26964959
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| ||||| | || ||| ||||   ||||| ||||||| ||  |  || | |   ||||    
T  26964805 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccatgtgt-tgatgttggatactatgttccaacatgttttggaaattttcacgagat 26964903  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtct 162  Q
    |||||||| ||||||||||||| ||| || | ||||||||||||||||| ||||||    
T  26964904 gttggatatgatgttccaacattctgacacggttcagtgtgccttgttttatgtct 26964959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 19893988 - 19894062
Alignment:
Q  77 ttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||| ||||||||| ||||| | ||||||||||||    
T  19893988 ttcaacatgtgtttaggcatctctggaagatgttggatacgatgctccaacatcttggcacggttcagtgtgcct 19894062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 34639555 - 34639605
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  34639555 atgttggatacgatgttccaacatcttggcacggttcagtgtgccttgttt 34639605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 11961280 - 11961140
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatattt 203  Q
    |||||||||||||||||||||||||||||||| | || |||||| ||||||  ||| ||| || |  |  ||| |||| ||| ||||||||  ||  ||     
T  11961280 gatgttggatacgatgttccaacatcctggcacggtttagtgtgtcttgttctatgcctgattgtaagtgtgctttatctta-ttaaggaattcacgttc 11961182  T
Q  204 ccttatcatgctgaccaagctacgcgcatatctgtacataat 245  Q
     | |||| |||||||||||| |||||||||||||||||||||    
T  11961181 tcatatcttgctgaccaagcaacgcgcatatctgtacataat 11961140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 13869717 - 13869794
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgc 148  Q
    |||||||||||||| ||| ||||||||  |||||||||||||| | || |||||||||||||||| | ||||||||||    
T  13869717 aatgtttcaacatgtgtttaggcatctttgtaagatgttggatgcaattttccaacatcctggcacggttcagtgtgc 13869794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 19658731 - 19658683
Alignment:
Q  103 agatgttggatacgatgttccaacatcctggcaagattcagtgtgcctt 151  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  19658731 agatgttggatatgatgttccaacatcctagcacgattcagtgtgcctt 19658683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 33666698 - 33666556
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | || | ||   || |||   |||||||||||||| ||| |||| |||  | ||||    
T  33666698 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgat-gtaa-gttggaaccaatgtttcaacatgtgtttaggcgtctttggaaga 33666601  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||| |||| ||||||||||||||| | ||||||||||||    
T  33666600 tgttggatatgatgctccaacatcctggcacggttcagtgtgcct 33666556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 8465012 - 8465147
Alignment:
Q  101 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccata 200  Q
    ||||||||||||||| ||||||||||||||||||| | || ||||||||| | |||||  ||  || | |||  ||  | |||| |||||| |||| |||    
T  8465012 taagatgttggatacaatgttccaacatcctggcacggtttagtgtgcctgggttcattcctacttgtacgcgcgccctttattgtttaagaaaacaata 8465111  T
Q  201 tttccttatcatgctgaccaagctacgcgcatatct 236  Q
     ||||||||| |  ||||||||| ||||||||||||    
T  8465112 gttccttatcttattgaccaagcaacgcgcatatct 8465147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 11992365 - 11992424
Alignment:
Q  100 gtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||||||||||| | ||||||    
T  11992365 gtaagatgttggatacaatgtttcaacatcctagcacgattcagtgtgcctgggttcatg 11992424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 25970521 - 25970442
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||| ||||||| ||| |||| |||| ||||||||||||||| |||| ||||||||| ||||| | ||||||||||||    
T  25970521 aatgttccaacatgtgtttaggcgtctctgtaagatgttggatatgatgctccaacatcttggcacggttcagtgtgcct 25970442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 25974961 - 25974882
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||| ||||||| ||| |||| |||| ||||||||||||||| |||| ||||||||| ||||| | ||||||||||||    
T  25974961 aatgttccaacatgtgtttaggcgtctctgtaagatgttggatatgatgctccaacatcttggcacggttcagtgtgcct 25974882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 20989040 - 20989193
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| |||||||||||  |||||||||| |||||||||||||| || | ||||  || |||   || ||| ||||||| ||| ||||||||  |||||    
T  20989040 tgttgggtatttgtattggatgcattgttgctaaaacaaatattcttgct-gtgtaagttggaacaaaagttccaacatgtgtttaggcatctatgtaag 20989138  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    || ||||||||||||||| ||||||||  || | ||||||||| |||| ||||||    
T  20989139 atattggatacgatgttcaaacatcctcacacggttcagtgtgtcttggttcatg 20989193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 24542465 - 24542332
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatattt 203  Q
    ||||||||||||||||||||||||| |||||| | || ||| ||||| | |||||| ||  || | | |   | |  |||||||||||||||||||||||    
T  24542465 gatgttggatacgatgttccaacattctggcacggtttagtatgcctgggttcatgcctacttgtacacgcacctagtattatttaaggaaaccatattt 24542366  T
Q  204 ccttatcatgctgaccaagctacgcgcatatctg 237  Q
    ||||||| |  ||||||| | || ||||||||||    
T  24542365 ccttatcttattgaccaaccaacacgcatatctg 24542332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 20764351 - 20764399
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttg 152  Q
    |||||||||||  ||||| ||||||||||||||| ||||||||||||||    
T  20764351 gatgttggatataatgtttcaacatcctggcaaggttcagtgtgccttg 20764399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 21316941 - 21316992
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||| |||||    
T  21316941 gatgttggatatgatgttccaacatcctggcatagttcagtgtgccctgttt 21316992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 24542738 - 24542683
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    ||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||    
T  24542738 tatttgtattgactgcattattgctaaaacaaatatccatgtttgtgatgttggat 24542683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 19168355 - 19168202
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||| | || | ||||  || |||   |||||| ||||||| ||| |||||||||  ||      
T  19168355 tgttgggtatttgtattggctgcattgttgctaaaataaatatccttgat-gtgtaagttggaaccaatgttccaacatgtgtttaggcatctctataga 19168257  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    ||||||| ||||||| ||||||||||||||| | || ||||||||| | ||||||    
T  19168256 atgttgggtacgatgctccaacatcctggcacggtttagtgtgcctgggttcatg 19168202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 20465230 - 20465288
Alignment:
Q  74 tgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcct 131  Q
    |||| ||||||| ||| |||||||||  |||||||||||||| ||||||||||||||||    
T  20465230 tgttccaacatgtgtttaggcatctctataagatgttggatatgatgttccaacatcct 20465288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 20465319 - 20465385
Alignment:
Q  181 tattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||| ||||||||||| ||||||||||||| |  ||||||||| |||| ||||||| |||| |||||    
T  20465319 tattgtttaaggaaacaatatttccttatcttattgaccaagcaacgcacatatctttacagaatca 20465385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 21705875 - 21706009
Alignment:
Q  101 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg--tctgtttatgcgcatgcgttatattatttaaggaaacca 198  Q
    ||||||||||||||| ||||||||| ||| ||||| | |||||||||||| | ||| ||  | | |||||||||  ||  | |||| |||||| |||| |    
T  21705875 taagatgttggatacaatgttccaatatcttggcatgcttcagtgtgcctgggttcttgcctatatttatgcgc--gccctttattgtttaagtaaacaa 21705972  T
Q  199 tatttccttatcatgctgaccaagctacgcgcatatc 235  Q
    |||||||||||| |  ||||||||| ||||| |||||    
T  21705973 tatttccttatcttattgaccaagcaacgcgtatatc 21706009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 17868220 - 17868297
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacat 84  Q
    |||||| |||||||||||  |||||| ||| ||||| |||||| ||||||| |||||| ||||  |||||| ||||||    
T  17868220 tgttgggtatttgtattggttgcattattgctaaaataaatatccatgtttatgttgttggatacaatgttccaacat 17868297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17868275 - 17868328
Alignment:
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    |||||||||| ||||||||||||| || || | |||||||||||| ||||||||    
T  17868275 tgttggatacaatgttccaacatcgtgacacggttcagtgtgcctggtttcatg 17868328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 17878003 - 17878080
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacat 84  Q
    |||||| |||||||||||  |||||| ||| ||||| |||||| ||||||| |||||| ||||  |||||| ||||||    
T  17878003 tgttgggtatttgtattggttgcattattgctaaaataaatatccatgtttatgttgttggatacaatgttccaacat 17878080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17878058 - 17878111
Alignment:
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    |||||||||| ||||||||||||| || || | |||||||||||| ||||||||    
T  17878058 tgttggatacaatgttccaacatcgtgacacggttcagtgtgcctggtttcatg 17878111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23880948 - 23880993
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgt 59  Q
    ||||||||||| ||||||| ||| |||||||||||| |||||||||    
T  23880948 tatttgtattggctgcattattgctaaaacaaatatccatgtttgt 23880993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 21531279 - 21531083
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggat 113  Q
    |||||||||||  |||||| ||| ||||||||||||||||||||||||||| | ||   ||||| ||||||| |||||||||||| ||||||||||||||    
T  21531279 tatttgtattggttgcattattgctaaaacaaatattcatgtttgtgttgttgaatactatgttccaacatgtttcaggcatctctgtaagatgttggat 21531180  T
Q  114 acgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatc 210  Q
    || ||||||||||||||||| | | ||| ||||||||||||||||| |||||| | |||  || || ||||||||||||||||||||||||||||||    
T  21531179 acaatgttccaacatcctggtatggttcggtgtgccttgtttcatgcctgtttgtacgcgcgccttttattatttaaggaaaccatatttccttatc 21531083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 15329228 - 15329001
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||| |||   |||||| ||||||| ||||||||| || |||||||    
T  15329228 tgttgggtatttgtattggctacattgttgctaaaacaaatattcatgtttgtgttgttggaaccaatgttccaacatgattcaggcatgtctgtaagat 15329129  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
    ||||||||||||||||||||||||||||| | ||| ||||||| ||| || || |||||| | |||   |  || | ||||||||||||| |||||||||    
T  15329128 gttggatacgatgttccaacatcctggcacggttctgtgtgccatgtatcttgcctgtttgtacgcgcac-ctaaactatttaaggaaacaatatttcct 15329030  T
Q  207 tatcatgctgaccaagctacgcgcatatc 235  Q
    |||| |  |||| |||| |||||||||||    
T  15329029 tatcttattgactaagcaacgcgcatatc 15329001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 21249448 - 21249601
Alignment:
Q  7 tgttggatatttgtattgtctgca-ttgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| | ||| || ||| |||||||||||| |||| ||||||||| ||||   ||||| ||||||| ||||||||| || ||||||    
T  21249448 tgttgggtatttgtattggcagcaattattggtaaaacaaatatccatgattgtgttgttggatactatgttccaacatgtttcaggcatttctgtaaga 21249547  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  21249548 tgttggatacgatgttccaacatcctggcacggtttagtgtgccttgtttcatg 21249601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 24789478 - 24789553
Alignment:
Q  76 tttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||| ||| ||||||||| | |||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  24789478 tttcaacatgtgtttaggcatctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcct 24789553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 27108254 - 27108203
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  27108254 gatgttggatacgatgttccaacatcctggcacggttcagtgtgccatgttt 27108203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 27111843 - 27111792
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||||||||||||| | |||| |||||| |||||    
T  27111843 gatgttggatacgatgttccaacatcctggcacggttcaatgtgccctgttt 27111792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 36397839 - 36397889
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| |||||    
T  36397839 atgttggatacgatgttccaacatcttggcacggttcagtgtgccctgttt 36397889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 23759533 - 23759484
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtt 56  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||| ||||    
T  23759533 tgttgggtatttgtattggctgcattgttgctaaaacaaatattcttgtt 23759484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 24311201 - 24311246
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    |||||||||||| ||||||||||||||||||| | |||||||||||    
T  24311201 gatgttggatacaatgttccaacatcctggcacggttcagtgtgcc 24311246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 12911401 - 12911359
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  12911401 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 12911359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 20714001 - 20714233
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggat 113  Q
    ||||||||||| ||||||| ||| |||||||||||| |||||||  | ||| |||| | ||||| ||||||| ||||||||||||  ||||||||| |||    
T  20714001 tatttgtattggctgcattattgctaaaacaaatatccatgtttaggatgttggatatcatgttccaacatgtttcaggcatctctataagatgttagat 20714100  T
Q  114 acgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatg 213  Q
    |||||||||||||||||||| | | || |||||||||| ||||||| |||||| | |||  || |||| || |||||||||||||| || || |||| |     
T  20714101 acgatgttccaacatcctggaacggtttagtgtgccttctttcatgcctgtttgtacgcgcgctttatctt-tttaaggaaaccattttcccgtatctta 20714199  T
Q  214 ctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||||||||| ||||||||||||||||| |||||    
T  20714200 ctgaccaagcaacgcgcatatctgtacagaatca 20714233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 26037686 - 26037446
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||||| |||||||||||| |||   |||||||||||||| ||| ||||||||| ||||||    
T  26037686 tgttgggtatttgtattggctgcattattgctaaaacaaatattcttgtttgtgttgttggaaccaatgtttcaacatgtgtttaggcatctctgtaaga 26037587  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    ||| |||||||||||||||||||||||||| | |||||||||||| | ||||||  | |||  ||||   |  | |||| ||||||||||| ||||||||    
T  26037586 tgtcggatacgatgttccaacatcctggcatggttcagtgtgcctcggttcatgcatattt-ggcgcgcaccctttattgtttaaggaaacaatatttcc 26037488  T
Q  206 ttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||||| |  ||||||||| |||||||||||| |||| |||||    
T  26037487 ttatcctattgaccaagcaacgcgcatatctttacaaaatca 26037446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 22081942 - 22082083
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||| | |   |||||| ||||||  |||||||||||| |||||||    
T  22081942 tgttgggtatttgtattggctgtattgttgttaaaacaaatatccatgtttgtgttgttgaaatcaatgttccaacatatttcaggcatctctgtaagat 22082041  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgc 148  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  22082042 gttggatacgatgttccaacatcctggcacggttcagtgtgc 22082083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 38406269 - 38406029
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| |||||||||||  |  ||| ||| |||||||||||||| |||||||||||| |||   |||||| ||||||| ||||||||| ||  ||||||    
T  38406269 tgttgggtatttgtattggatttattattgctaaaacaaatattcttgtttgtgttgttggaaccaatgttccaacatgattcaggcatgtctataagat 38406170  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
    |||||||||||||||||| |||||| ||| | ||||||||||| ||| || ||  ||||| | ||| |||  | |||| ||||||||||| |||||||||    
T  38406169 gttggatacgatgttccagcatcctagcacggttcagtgtgccctgtatcttgcttgtttgtacgcgtgccctttattgtttaaggaaacaatatttcct 38406070  T
Q  207 tatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||| |  ||||||||| ||||| |||||| |||| |||||    
T  38406069 tatcttattgaccaagcaacgcgtatatctttacagaatca 38406029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 18222018 - 18221814
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| |||   | | || |||||||||||||| || |  |||||||    
T  18222018 tgttgggtatttgtattggatgcattgttgttaaaacaaatattcatgtttgtgttgttggaaccatttttccaacatggttcaggtatgtttgtaagat 18221919  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctg-tttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    |||||||| |||||||||||||| ||| | | ||||||||||| ||| |||||  || ||| | ||  ||| | | |||||||||||||||| |||||||    
T  18221918 gttggatatgatgttccaacatcttggaatggttcagtgtgccatgtatcatgcatgctttgtacgtgtgcctaagattatttaaggaaaccgtatttcc 18221819  T
Q  206 ttatc 210  Q
    |||||    
T  18221818 ttatc 18221814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 23419809 - 23419936
Alignment:
Q  9 ttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaagatg 107  Q
    |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||    |||||||||||||| ||| |||| |||| ||||||||    
T  23419809 ttgggtatttgtattggctgcattgttgttaaaacaaatattcttgtttgtgttgttggtaccaatgtttcaacatgtgtttaggcgtctctgtaagatg 23419908  T
Q  108 ttggatacgatgttccaacatcctggca 135  Q
    |||||||| ||| |||||||||||||||    
T  23419909 ttggatacaatgctccaacatcctggca 23419936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 23624749 - 23624607
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | ||||| |||||| |||   |||||  ||||||| |||| |||| || |||||||    
T  23624749 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttgtttctgttgttggaaccaatgtcccaacatgattcaagcatgtctgtaagat 23624650  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  23624649 gttggatacgatgttccaacatcctggcacggttcagtgtgcc 23624607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 13941266 - 13941414
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| | ||||||||| ||||||| ||| |||||||||||| |||||||||||||| ||||   ||||| ||||||| || |||||| |  |||||||    
T  13941266 tgttgggtttttgtattggctgcattattgctaaaacaaatatccatgtttgtgttgttggataccatgttccaacatgttttaggcatttttgtaagat 13941365  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||| ||||||||||||||||| || | |||| ||||||| ||||    
T  13941366 gttggatatgatgttccaacatcctgacatggttcaatgtgcctagttt 13941414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 26328467 - 26328590
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||| |||||  |||||| ||| |||||||||||||||||| |||||||| |||   |||||| ||||||| | |||| ||||  || ||||    
T  26328467 tgttgggtatttatattggttgcattattgctaaaacaaatattcatgtatgtgttgttggaaccaatgttccaacatgttacaggtatctatgtgagat 26328566  T
Q  107 gttggatacgatgttccaacatcc 130  Q
    ||||||||||||||||||||||||    
T  26328567 gttggatacgatgttccaacatcc 26328590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 30605029 - 30605182
Alignment:
Q  94 atctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaagga 193  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||   ||||||  | ||| | ||   ||  | |||| ||||||||    
T  30605029 atctctgtaagatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgagttcatgcttatttgtacgggcgccctttattgtttaagga 30605128  T
Q  194 aaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||| ||||||||||||| |  ||| ||||| |||||||||||| |||| |||||    
T  30605129 aacaatatttccttatcttattgatcaagcaacgcgcatatctttacagaatca 30605182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 23757506 - 23757648
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| |||||||| ||  |||||||||| |||||||||||| | | | |||||| || |||   |||||| ||||||| ||| |||||||||  ||     
T  23757506 ctgttgggtatttgtactgggtgcattgttgctaaaacaaatatcctt-tatgtgttagttggaaccaatgttccaacatgtgtttaggcatctctatat 23757604  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtg 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  23757605 gatgttggatacgatgttccaacatcctggcacgattcagtgtg 23757648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 23822962 - 23823104
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| |||||||| ||  |||||||||| |||||||||||| | | | |||||| || |||   |||||| ||||||| ||| |||||||||  ||     
T  23822962 ctgttgggtatttgtactgggtgcattgttgctaaaacaaatatcctt-tatgtgttagttggaaccaatgttccaacatgtgtttaggcatctctatat 23823060  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtg 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  23823061 gatgttggatacgatgttccaacatcctggcacgattcagtgtg 23823104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 22251291 - 22251435
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | ||||| |||  || |||   || ||||||||||| ||| |||| |||  | |||    
T  22251291 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgttt-tgtaagttggaaccaaagtttcaacatgtgtttaggcgtctttgaaag 22251389  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||    
T  22251390 atgttggatacgatgctccaacatcctggcacggttcagtgtgcct 22251435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 22404010 - 22404149
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtt-tgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| | |||| |||   || |||   || ||| ||||||| ||| |||| |||| | ||    
T  22404010 ctgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgttctgt-aagttggaaccaaagttccaacatgtgtttaggcgtctctggaa 22404108  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagt 144  Q
    |||||||||||| ||||||||||||||||||| | ||||||    
T  22404109 gatgttggatacaatgttccaacatcctggcatggttcagt 22404149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 24190773 - 24190630
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtt-tgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| | |||| |||   || |||  ||| ||| ||||||| ||| |||| |||  | ||    
T  24190773 ctgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgttctgt-aagttggaactaaagttccaacatgtgtttaggcgtctttggaa 24190675  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgc 148  Q
    |||||||||||||||| |||||||| |||||| | ||||||||||    
T  24190674 gatgttggatacgatgctccaacattctggcacggttcagtgtgc 24190630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 22183666 - 22183717
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||| ||| ||||| | ||||||||||| |||||    
T  22183666 gatgttggatacgatgttccaatatcttggcacggttcagtgtgccctgttt 22183717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 22240228 - 22240270
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  22240228 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 22240270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 20127753 - 20127705
Alignment:
Q  101 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    |||||||||||||||||||||||||||||  || | | |||||||||||    
T  20127753 taagatgttggatacgatgttccaacatctgggtacggttcagtgtgcc 20127705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 286151 - 286388
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||  ||| ||||| ||||||||||||||||| ||| ||||   ||||| ||||||| |||||||||||| |||||||    
T  286151 tgttgggtatttgtattggctgcatcattgctaaaataaatattcatgtttgtgatgttggatactatgttccaacatgtttcaggcatctctgtaagat 286250  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
    ||||||||||||||||||||||||| ||| | ||||||||| |||||||||||  ||||| | |||  ||||||| ||| |||||||||||   || ||     
T  286251 gttggatacgatgttccaacatcctagcacggttcagtgtgtcttgtttcatgcatgtttgtacgc--gcgttatctta-ttaaggaaacctctttccca 286347  T
Q  207 tatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||| || ||||||||| ||||||||||||| ||| |||||    
T  286348 tatcttgatgaccaagcaacgcgcatatctgcacagaatca 286388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 21253347 - 21253488
Alignment:
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    |||| |||||||||||||||||||||| || | ||||||||||||||||||||| |||||| | ||| ||| |||||||||||||| || ||||||||||    
T  21253347 tgttagatacgatgttccaacatcctgacacggttcagtgtgccttgtttcatgcctgtttgtacgcgtgctttatattatttaagaaacccatatttcc 21253446  T
Q  206 ttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||||| |  ||||||||| || ||||||||| |||| |||||    
T  21253447 ttatcttattgaccaagcaacacgcatatctttacagaatca 21253488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 17042108 - 17042246
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatattt 203  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||| | |||||| ||    |  |||  || ||||||||||||||||||||||||||    
T  17042108 gatgttggatacgatgttccgacatcctggcacggttcagtgtgcctgggttcatgcct----acacgc--gccttatattatttaaggaaaccatattt 17042201  T
Q  204 ccttatcatgctgaccaagctacgcgcatatctgtacataatcaa 248  Q
    ||||||| |  ||||||||| | | ||||||||||||||||||||    
T  17042202 ccttatcttattgaccaagcaatgtgcatatctgtacataatcaa 17042246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 21547692 - 21547566
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| ||||| |||||||| |||||||||||| |||   |||||| ||||||| ||| | |||||||  |||||    
T  21547692 tgttgggtatttgtattggctgcattattgctaaaataaatattcttgtttgtgttgttggaaccaatgttccaacatgtgtttatgcatctctataaga 21547593  T
Q  106 tgttggatacgatgttccaacatcctg 132  Q
    ||||||||||||||||||||| |||||    
T  21547592 tgttggatacgatgttccaacttcctg 21547566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 28052040 - 28051918
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaagatgttgga 112  Q
    |||||||||||  |||||| ||| ||||||||||||   | |||||||||| |||   |||||| ||||||| ||| ||||||||| |||||||||||||    
T  28052040 tatttgtattggttgcattattgctaaaacaaatatctttatttgtgttgttggaaccaatgttccaacatgtgtttaggcatctctgtaagatgttgga 28051941  T
Q  113 tacgatgttccaacatcctggca 135  Q
    |||||||||||||||||||||||    
T  28051940 tacgatgttccaacatcctggca 28051918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 3551731 - 3551878
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||   || || ||| ||  || || ||| || |||||||    
T  3551731 tgttgggtatttgtattggctgcattattgctaaaacaaatatccatgtttgtgatgtgggatactatattccaa-atcttttagacatttctgtaagat 3551829  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||| |||||||||||||| ||||| | |||||||||||||||||    
T  3551830 gttggatatgatgttccaacatcgtggcacggttcagtgtgccttgttt 3551878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 6578812 - 6578951
Alignment:
Q  19 gtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgat 118  Q
    |||||| || |||||||| ||||||||||| ||||||||||| ||| ||||   |  |  ||||||| || |||||| || |||||||||||||||||||    
T  6578812 gtattggcttcattgttgctaaaacaaatactcatgtttgtgatgttggatacgagttgccaacatgttttaggcatttctgtaagatgttggatacgat 6578911  T
Q  119 gttccaacatcctggcaagattcagtgtgccttgtttcat 158  Q
    |||||||||||||| || | ||||||||| || |||||||    
T  6578912 gttccaacatcctgacacggttcagtgtgtctggtttcat 6578951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 18063464 - 18063698
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaac--atggttcaggcatctccgtaagatgttgg 111  Q
    |||||||||||  | ||| |||| |||||||||||| | ||| |||| ||| |||   |||||||||||  ||| || ||||||||  ||||||||||||    
T  18063464 tatttgtattggttacatagttgctaaaacaaatatccttgtatgtggtgttggaaccaatgtttcaacgtatgatt-aggcatctttgtaagatgttgg 18063562  T
Q  112 atacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatca 211  Q
    |||||| ||||||||||||||||| | |||||||||||||| ||| || || | | | ||   || ||  ||| ||||||||||| |||||||||||||     
T  18063563 atacgacgttccaacatcctggcacggttcagtgtgccttggttcttgcctatatgtacgtgcgcctttcattgtttaaggaaacaatatttccttatct 18063662  T
Q  212 tgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |  ||||||||| || ||||||| | |||| |||||    
T  18063663 tattgaccaagcaacacgcatatttctacagaatca 18063698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 979634 - 979780
Alignment:
Q  9 ttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgt 108  Q
    |||| ||||||||||| || |||| ||| ||||||||||||  ||| ||||| ||| ||||   ||||| ||||||  || ||| || || |||||||||    
T  979634 ttgggtatttgtattggctacattattgctaaaacaaatatctatgattgtgatgttggatactatgttccaacatattttaggtatttctgtaagatgt 979733  T
Q  109 tggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||| ||||||||||||||  |||| | |||||||||||||||||    
T  979734 tggatatgatgttccaacatctcggcacggttcagtgtgccttgttt 979780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 13514863 - 13515110
Alignment:
Q  2 agaactgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctcc 99  Q
    |||| |||||| ||||||||||| ||||||||||| |||||||||||| |  | | ||||  || |||   |||||| ||||||| ||| | |||||||     
T  13514863 agaagtgttgggtatttgtattggctgcattgttgctaaaacaaatatcctcgat-gtgtaagttggaaccaatgttccaacatgtgtttaagcatctct 13514961  T
Q  100 gtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcctt-gtttcatgtctgtttatgcgcatgcgttatattatttaaggaaacca 198  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||| |  ||| | || ||  || ||||   ||  | |||| ||||||||||| |    
T  13514962 gtaagatgttggatacgatgttccaacatcctagcacggttcagtgtgcttgagttacttgcctacttgtgcgtgcgccctttattgtttaaggaaacaa 13515061  T
Q  199 tatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||||||||||| |  ||| ||||| |||||||||||| |||| |||||    
T  13515062 tatttccttatcttattgatcaagcaacgcgcatatctatacagaatca 13515110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 6578572 - 6578634
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||    
T  6578572 tgttggatatttgtattggctgcattattgctaaaacaaatatccatgtttgtgatgttggat 6578634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 17135394 - 17135539
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| | ||||  |||  || |||   || ||||||||||| ||| |||| |||| | ||    
T  17135394 ctgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgttc-tgtaagttggaaccaaagtttcaacatgtgtttaggcgtctctggaa 17135492  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||| |||| ||||||||||||||| | ||| ||||||||    
T  17135493 gatgttggatatgatgctccaacatcctggcacggttcggtgtgcct 17135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 20626958 - 20627022
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggca 135  Q
    |||||| ||||||| ||| ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  20626958 aatgttccaacatgtgtttaggcatctctgtaagatattggatacaatgttccaacatcctggca 20627022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 24196434 - 24196290
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| |||||||||||  ||||||||||| | |||||     || |||   || ||||||||||| ||| |||| |||| | ||||    
T  24196434 tgttgggtatttgtattggctgcattgttgcaaaaacaaatatccttgttttctaagttggaaccaaagtttcaacatgtgtttaggcgtctctggaaga 24196335  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||| ||||| | ||||||||||||| | ||||||||||||    
T  24196334 tgttggatgcgatgcttcaacatcctggcacggttcagtgtgcct 24196290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 214443 - 214494
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||||||| ||||| | ||||||||| |||||||    
T  214443 gatgttggatacgatgttccaacatcttggcacggttcagtgtgtcttgttt 214494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 296307 - 296248
Alignment:
Q  5 actgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgt 64  Q
    |||||||| |||||||||||  |||||||||| |||||||||||| | ||||||||||||    
T  296307 actgttgggtatttgtattggttgcattgttgctaaaacaaatatccttgtttgtgttgt 296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 18477904 - 18477854
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| |||||    
T  18477904 atgttggatacgatgttccaacatcttggcacggttcagtgtgccctgttt 18477854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 18482707 - 18482853
Alignment:
Q  90 aggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattattta 189  Q
    |||| |||| |||||||||||||||||||||| |||||||||| || | ||||||||| ||   |||  | |||||| | |||   |  | |||| ||||    
T  18482707 aggcgtctctgtaagatgttggatacgatgtttcaacatcctgacacggttcagtgtgtctgagttctcgcctgtttgtacgcgcaccctttattgttta 18482806  T
Q  190 aggaaaccatatttccttatcatgctgaccaagctacgcgcatatct 236  Q
    ||||||| ||||||||||||| |  ||| ||||| ||||||||||||    
T  18482807 aggaaacaatatttccttatcttattgatcaagcaacgcgcatatct 18482853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 28052243 - 28052189
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgt 61  Q
    |||||| ||||||||||| ||||||| |||||||||||||||| | |||||||||    
T  28052243 tgttgggtatttgtattggctgcattattgttaaaacaaatatccttgtttgtgt 28052189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 8225893 - 8225849
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||    
T  8225893 atgttggatacgatgttccaacatcttggcacggttcagtgtgcc 8225849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 23953806 - 23953850
Alignment:
Q  5 actgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  23953806 actgttgggtatttgtattggctgcattgttgctaaaacaaatat 23953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 25020207 - 25020156
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||||||| || || | || ||||||||||||||    
T  25020207 gatgttggatacgatgttccaacatcttgccacggtttagtgtgccttgttt 25020156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 7028321 - 7028363
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  7028321 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 7028363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 7028496 - 7028550
Alignment:
Q  181 tattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatc 235  Q
    |||||||||||||||| ||||||||||||| |  ||| ||||| |||||||||||    
T  7028496 tattatttaaggaaacaatatttccttatcttattgatcaagcaacgcgcatatc 7028550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 15572256 - 15572298
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  15572256 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 15572298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 21253300 - 21253349
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgt 64  Q
    ||||||||||| ||||||| ||| |||||||||||| ||||||||||||||    
T  21253300 tatttgtattg-ctgcattattgctaaaacaaatatccatgtttgtgttgt 21253349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 15674182 - 15674231
Alignment:
Q  100 gtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    ||||||||||||||||||||| |||||||| |||||   |||||||||||    
T  15674182 gtaagatgttggatacgatgtcccaacatcttggcacagttcagtgtgcc 15674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 18622566 - 18622340
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| |||||||||||  |||||| ||| |||||||||||||| |||||||||||   |||   ||||| ||||||| ||||| |||||| |||||||    
T  18622566 tgttgggtatttgtattggttgcattattgctaaaacaaatattcttgtttgtgttg---gatactatgttccaacatgtttcagacatctctgtaagat 18622470  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcct 206  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||| || | || | | |||  || |||||||||||||||||| ||||||||||    
T  18622469 gttggatacgatgttccaacatcttggcacggttcagtgtgccttgtttcttgccggtgtgtacgcgcgctttatattatttaaggaaatcatatttcct 18622370  T
Q  207 tatcatgctgaccaagctacgcgcatatct 236  Q
    |||| |  ||||||| | |||| |||||||    
T  18622369 tatcttattgaccaaacaacgcacatatct 18622340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 27924768 - 27924945
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgc 170  Q
    |||||| ||||||| ||| |||||| || ||||||||||||||| ||||||||||||||||| || |||||||||||||| | |||||| ||  || | |    
T  27924768 aatgttccaacatgtgtttaggcatttctgtaagatgttggataagatgttccaacatcctgacacgattcagtgtgcctgggttcatgcctacttgtac 27924867  T
Q  171 gcatgcgttatattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatcaa 248  Q
    ||| ||  | |||| ||||||||||| ||||||||||||| |  |||| |||| |||||||||||| |||| ||||||    
T  27924868 gcacgctctttattgtttaaggaaacaatatttccttatcttattgacaaagcaacgcgcatatctatacagaatcaa 27924945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 33962632 - 33962401
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatgg-ttcaggcatctccgtaagatgttgga 112  Q
    ||||||||||| ||||||| ||| ||||| |||||||    |||||||||| |||   |||||| |||||||  || ||||||||| |||||||||||||    
T  33962632 tatttgtattggctgcattattgctaaaataaatatta---tttgtgttgttggaaccaatgttccaacatgtatttaggcatctctgtaagatgttgga 33962536  T
Q  113 tacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcat 212  Q
    ||  |||||||||||||||||||   ||||||||||||    |||||||| ||| | |||  ||  | |||| ||||||||||| ||||||||||||| |    
T  33962535 tattatgttccaacatcctggcacagttcagtgtgcctgaggtcatgtctctttgtacgcgcgccctttattgtttaaggaaacaatatttccttatctt 33962436  T
Q  213 gctgaccaagctacgcgcatatctgtacataatca 247  Q
      ||| ||||| |||||||||||| |||| |||||    
T  33962435 attgatcaagcaacgcgcatatctttacagaatca 33962401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 26537196 - 26536961
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||   |||||| |||||||||||||||| | ||||||||||||  ||   ||| ||  |||||| ||| |||||| |||||||||    
T  26537196 tgttgggtatttgtattagttgcattattgttaaaacaaatatccttgtttgtgttgttagaaccaatcttctaacatgtgtttaggcatatccgtaaga 26537097  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    ||||||||| |||||||||||||| ||||| | ||||||||| || | |||||| || ||| | ||   ||    |||  ||||||||||| ||||||||    
T  26537096 tgttggatatgatgttccaacatcatggcacggttcagtgtgtctaggttcatgcctatttgtacgtgcgccacttatggtttaaggaaacaatatttcc 26536997  T
Q  206 ttatcatgctgaccaagctacgcgcatatctgtaca 241  Q
    ||||| |  ||||||||| |||||||||||| ||||    
T  26536996 ttatcttattgaccaagcaacgcgcatatctttaca 26536961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 9997392 - 9997166
Alignment:
Q  19 gtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgat 118  Q
    |||||| || |||||||| |||||||||||  |||||||||| ||| ||||  ||  |||||||||| || |||||| || |||||||||||||||||||    
T  9997392 gtattggcttcattgttgctaaaacaaatacccatgtttgtgatgttggatacaagttttcaacatgttttaggcatttctgtaagatgttggatacgat 9997293  T
Q  119 gttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatgctgac 218  Q
    ||| | ||||  ||||| | ||||||||||||  ||||||| || ||| | |||  |  || | ||| |||||||||||   ||| | |||| || ||||    
T  9997292 gtt-ctacattttggcacggttcagtgtgcctgatttcatgcctatttgtacgcgcgtcttttctta-ttaaggaaacctcgttttcatatcttggtgac 9997195  T
Q  219 caagctacgcgcatatctgtacataatca 247  Q
    ||||| |||||||||||||||||||||||    
T  9997194 caagcaacgcgcatatctgtacataatca 9997166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 33977958 - 33977727
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatgg-ttcaggcatctccgtaagatgttgga 112  Q
    ||||||||||| ||||||| ||| ||||| |||||||    |||||||||| |||   |||||| |||||||  || ||||||||| |||||||||||||    
T  33977958 tatttgtattggctgcattattgctaaaataaatatta---tttgtgttgttggaaccaatgttccaacatgtatttaggcatctctgtaagatgttgga 33977862  T
Q  113 tacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcat 212  Q
    ||  |||||||||||||||| ||   ||||||||| || | |||||| || ||| | ||   ||  | |||| ||||||||||| ||||||||||||| |    
T  33977861 tattatgttccaacatcctgacacagttcagtgtgtctgggttcatgcctatttgtacgtgcgccctttattgtttaaggaaacaatatttccttatctt 33977762  T
Q  213 gctgaccaagctacgcgcatatctgtacataatca 247  Q
      ||| ||||| | |||||||||| |||| |||||    
T  33977761 attgatcaagcaatgcgcatatctttacagaatca 33977727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 23540722 - 23540887
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgc 170  Q
    |||||| ||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||||||   || ||||||||| | || ||| ||  || | |    
T  23540722 aatgttccaacatgtgtttaggcatctctgtaagatgatggatacgatgttccaacatcctggcacagtttagtgtgcctgggtttatgcctacttgtac 23540821  T
Q  171 gcatgcgttatattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatct 236  Q
    ||  ||  | |||| ||||||||||| ||||||||||||| |  |||  |||| ||||||||||||    
T  23540822 gcgcgccctttattgtttaaggaaacaatatttccttatcttattgattaagcaacgcgcatatct 23540887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 9997632 - 9997580
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgt 59  Q
    |||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  9997632 tgttgggtatttgtattggctgcattattgctaaaacaaatattcatgtttgt 9997580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 20254128 - 20254272
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| |||||| |||| || |||  ||| ||||| |||||| |||| ||||| ||| ||||   ||||| ||||||| || ||||||  | || | ||    
T  20254128 tgttgggtatttgcattggctacatcattgctaaaataaatatccatgattgtgatgttggatactatgttccaacatgttttaggcattcctgtgaaat 20254227  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgcctt 151  Q
    |||||||| ||||||||||||||||| || | |||||||||||||    
T  20254228 gttggatatgatgttccaacatcctgacacggttcagtgtgcctt 20254272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 23250524 - 23250483
Alignment:
Q  108 ttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  23250524 ttggacacgatgttccaacatcctggcatggttcagtgtgcc 23250483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 45136954 - 45136893
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctg 132  Q
    |||||| ||||||| ||| ||| ||||| || |||||||||||| |||||||||||||||||    
T  45136954 aatgttccaacatgtgtttaggtatctctgttagatgttggatatgatgttccaacatcctg 45136893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 858 - 639
Alignment:
Q  19 gtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgat 118  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| |||  ||||||| ||  ||||||||||||| || |||||||||||||||||||    
T  858 gtattgtcttcattgttgctaaaacaaatattcatgtttgtgttgttggaactaatgttccaggatggttcaggcatgtctgtaagatgttggatacgat 759  T
Q  119 gttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatgctgac 218  Q
    ||||||||||| ||||| | ||||||||||| || |||||| ||     | |||  || || |||||||||||||||||||||||||||||| |  ||||    
T  758 gttccaacatcttggcacggttcagtgtgcc-tggttcatgcctacacttacgcgcgccttgtattatttaaggaaaccatatttccttatcttattgac 660  T
Q  219 caagctacgcgcatatctgta 239  Q
    ||||  ||  |||||||||||    
T  659 caagtaacatgcatatctgta 639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 15699585 - 15699729
Alignment:
Q  5 actgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaag 104  Q
    |||||| | ||||||||||| ||||||||||  |||||||||||| | |||||||||||| ||||| |||||| |||||||||||| |||| ||| ||||    
T  15699585 actgtttggtatttgtattggctgcattgttactaaaacaaatatccttgtttgtgttgttggatgcaatgttccaacatggttcaagcatgtccataag 15699684  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    ||||||||| |||||||||||||||||||||   |||||||||||    
T  15699685 atgttggatccgatgttccaacatcctggcacagttcagtgtgcc 15699729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 19182933 - 19183164
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| || |||| ||| |||||||||||| | |  ||||||||| ||||  |||||| ||||||| || ||||||||| |||||||    
T  19182933 tgttgggtatttgtattggctacattattgctaaaacaaatatccttacttgtgttgttggatacaatgttccaacatgttttaggcatctctgtaagat 19183032  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgc-cttg-tttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttc 204  Q
    ||||||||||||||||  ||||||||||| | |||||||||| | ||  |||||| || ||| | | |  ||  | ||||||||||||||||||||||||    
T  19183033 gttggatacgatgttctgacatcctggcacggttcagtgtgcgcatgagttcatgcctatttgtacacgcgctctttattatttaaggaaaccatatttc 19183132  T
Q  205 cttatcatgctgaccaagctacgcgcatatct 236  Q
    |||||| |  ||||||| | |||| |||||||    
T  19183133 cttatcttcttgaccaaacaacgcacatatct 19183164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 10725106 - 10724977
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | |||||||||||| |||   |||||| ||||||  ||  ||||||||| ||||||    
T  10725106 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatatgtgtaggcatctctgtaaga 10725007  T
Q  106 tgttggatacgatgttccaacatcctggca 135  Q
    ||||||||||||||||||||||||||||||    
T  10725006 tgttggatacgatgttccaacatcctggca 10724977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 10938875 - 10938746
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | |||||||||||| |||   |||||| ||||||  ||  ||||||||| ||||||    
T  10938875 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatatgtgtaggcatctctgtaaga 10938776  T
Q  106 tgttggatacgatgttccaacatcctggca 135  Q
    ||||||||||||||||||||||||||||||    
T  10938775 tgttggatacgatgttccaacatcctggca 10938746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 15161753 - 15161869
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| |||||||||||||||| | |||||||||||| |||   |||||| ||||||| ||| ||||||||| ||||||    
T  15161753 tgttgggtatttgtattggctgcattattgttaaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatgtgtttaggcatctctgtaaga 15161852  T
Q  106 tgttggatacgatgttc 122  Q
    |||||||||||||||||    
T  15161853 tgttggatacgatgttc 15161869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 9069840 - 9069700
Alignment:
Q  19 gtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggatacgat 118  Q
    |||||| || |||||||| |||||||||||  |||||||||| ||| ||||  ||  || ||||||| ||  ||||| || |||||||||||||||||||    
T  9069840 gtattgacttcattgttgctaaaacaaatacccatgtttgtgatgttggatacaagtttccaacatgttttcggcatttctgtaagatgttggatacgat 9069741  T
Q  119 gttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    ||||||||||||||| | | ||||||||||||  |||||||    
T  9069740 gttccaacatcctggaacggttcagtgtgcctgatttcatg 9069700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 15623344 - 15623216
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| |||||||||||  |||||| |||  |||| |||||| ||| ||||||| || ||||   ||| | ||||||| || |||||| || |||||||    
T  15623344 tgttgggtatttgtattggttgcattattgccaaaataaatatccatctttgtgtagttggatactatgatccaacatgttttaggcatttctgtaagat 15623245  T
Q  107 gttggatacgatgttccaacatcctggca 135  Q
    |||||||||||||||||||||||||||||    
T  15623244 gttggatacgatgttccaacatcctggca 15623216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 33746731 - 33746588
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattca-gtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatt 202  Q
    ||||||||||||||||||| |||||||||||  | |||| ||||| || | |||||| ||  || |  ||  || || ||||||||||||||||||||||    
T  33746731 gatgttggatacgatgttctaacatcctggcgcggttcaagtgtgtctgggttcatgcctacttgtatgcgcgccttgtattatttaaggaaaccatatt 33746632  T
Q  203 tccttatcatgctgaccaagc-tacgcgcatatctgtacataat 245  Q
    |||||||| | ||||||||||  |||||||||||||||||||||    
T  33746631 tccttatcttactgaccaagcaaacgcgcatatctgtacataat 33746588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 49975058 - 49975008
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  49975058 atgttggatacgatgttccaacatcctggcacgattcagtgtgccctgttt 49975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 18600910 - 18601054
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||| ||||||| |||||||||||| | ||||  |||  || |||   |||||||||||||| ||| |||| |||  | |||    
T  18600910 tgttgggtatttgtattggctgtattgttgctaaaacaaatatccttgttc-tgtaagttggaaccaatgtttcaacatgtgtttaggcgtctgtggaag 18601008  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||    
T  18601009 atgttggatacgatgctccaacatcctggcacggttcagtgtgcct 18601054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 16384799 - 16384597
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | |||| ||||  || | |   |||||| ||||||| ||| |||| |||| | |||    
T  16384799 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgtt-gtgtaagttgaaaccaatgttccaacatgtgtttaggcgtctctggaag 16384701  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttc 204  Q
    ||||||||||||||| |||||||||||| ||   |||||||||||| | |||  | |||||| | |||  ||  | |||| ||||||||||| |||||||    
T  16384700 atgttggatacgatgctccaacatcctgacacagttcagtgtgcctgggttctcgcctgtttgtacgcgcgccctttattgtttaaggaaacaatatttc 16384601  T
Q  205 ctta 208  Q
    ||||    
T  16384600 ctta 16384597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 33744282 - 33744163
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatattt 203  Q
    ||||||||||| |||||||||||||||| ||| | |||||| || || | |||||| ||   | | ||| ||| || |||||||||||||||||||||||    
T  33744282 gatgttggataagatgttccaacatcctagcacggttcagtctgtctgggttcatgcctacatttacgcgtgccttgtattatttaaggaaaccatattt 33744183  T
Q  204 ccttatcatgctgaccaagc 223  Q
    | ||||| | ||||||||||    
T  33744182 ctttatcttactgaccaagc 33744163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10718285 - 10718235
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  10718285 atgttggatacgatgttccaacatcctggcacggttcagtgtgccctgttt 10718235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10932054 - 10932004
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  10932054 atgttggatacgatgttccaacatcctggcacggttcagtgtgccctgttt 10932004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10683057 - 10683007
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| |||||    
T  10683057 atgttggatacgatgttccaacatcttggcacggttcagtgtgccctgttt 10683007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10896697 - 10896647
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| |||||    
T  10896697 atgttggatacgatgttccaacatcttggcacggttcagtgtgccctgttt 10896647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 33744574 - 33744496
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg 85  Q
    |||||| ||||||||||| ||||||| ||| ||||||||||||  ||||||||| ||| |||| | ||||| |||||||    
T  33744574 tgttgggtatttgtattggctgcattattgctaaaacaaatatatatgtttgtgatgttggatattatgttccaacatg 33744496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 41786246 - 41786193
Alignment:
Q  102 aagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||| |||||||||||||||||||| | |||||| || |||||||    
T  41786246 aagatgttggatatgatgttccaacatcctggcacggttcagtatgtcttgttt 41786193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 41786331 - 41786278
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtg 60  Q
    |||||||||||||||||| ||||||| ||| |||||||||||| ||||| ||||    
T  41786331 tgttggatatttgtattggctgcattattgctaaaacaaatatccatgtatgtg 41786278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10723383 - 10723323
Alignment:
Q  9 ttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    |||||||||||||||| || |||| ||| |||||||||||| |||||||||| ||| ||||    
T  10723383 ttggatatttgtattggctacattattgctaaaacaaatatccatgtttgtgatgttggat 10723323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10937152 - 10937092
Alignment:
Q  9 ttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    |||||||||||||||| || |||| ||| |||||||||||| |||||||||| ||| ||||    
T  10937152 ttggatatttgtattggctacattattgctaaaacaaatatccatgtttgtgatgttggat 10937092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 10197596 - 10197647
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||||| |||||    
T  10197596 gatgttggatatgatgttccaacatcttggcacggttcagtgtgccatgttt 10197647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 10683327 - 10683272
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    ||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||    
T  10683327 tatttgtattggctgcattattgctaaaacaaatatccatgtttgtgatgttggat 10683272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 10896967 - 10896912
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    ||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||    
T  10896967 tatttgtattggctgcattattgctaaaacaaatatccatgtttgtgatgttggat 10896912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10723097 - 10723047
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | |||||||| || |||||    
T  10723097 atgttggatacgatgttccaacatcttggcacggttcagtgttccctgttt 10723047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 10936866 - 10936816
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||| ||||| | |||||||| || |||||    
T  10936866 atgttggatacgatgttccaacatcttggcacggttcagtgttccctgttt 10936816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 15161909 - 15161975
Alignment:
Q  181 tattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||| ||||||||||| ||||||||||||| |  ||||||||| |||| ||||||| |||| |||||    
T  15161909 tattgtttaaggaaacaatatttccttatcttattgaccaagcaacgcacatatctttacagaatca 15161975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 11905878 - 11905837
Alignment:
Q  103 agatgttggatacgatgttccaacatcctggcaagattcagt 144  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  11905878 agatgttggacacgatgttccaacatcctggcatggttcagt 11905837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 23399446 - 23399590
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||| | ||||  |||  || |||   || ||||||||||| ||| |||| |||| | |||    
T  23399446 tgttgggtatttgtattggctgcattgttgctaaaataaatatccttgttc-tgtaagttggaaccaaagtttcaacatgtgtttaggcgtctctggaag 23399544  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||| ||||| | ||||||||||||| | || |||||||||    
T  23399545 atgttggatgcgatgcttcaacatcctggcacggtttagtgtgcct 23399590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 25117669 - 25117636
Alignment:
Q  102 aagatgttggatacgatgttccaacatcctggca 135  Q
    |||||||||||||||||| |||||||||||||||    
T  25117669 aagatgttggatacgatgctccaacatcctggca 25117636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 32862456 - 32862408
Alignment:
Q  103 agatgttggatacgatgttccaacatcctggcaagattcagtgtgcctt 151  Q
    |||||||||||| |||||||||||||||||  | | |||||||||||||    
T  32862456 agatgttggatatgatgttccaacatcctgatacggttcagtgtgcctt 32862408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 1626474 - 1626241
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggat 113  Q
    ||||||||||| ||||||| ||| |||||||||||| | ||||| |||||| ||||  ||| || ||||||| || | |||| || ||||||||||||||    
T  1626474 tatttgtattggctgcattattgctaaaacaaatatccttgtttatgttgttggatacaatattccaacatgttttatgcatttctgtaagatgttggat 1626375  T
Q  114 acgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatg 213  Q
    | |||||||||||||||||| |   |||||||||||| |||||||| ||  || | |||  || |||| || |||||||||||||  || || |||| ||    
T  1626374 atgatgttccaacatcctggaacagttcagtgtgcctggtttcatgcctacttgtacgcgcgctttatcttttttaaggaaaccactttcccatatcttg 1626275  T
Q  214 ctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||||||||| |||||||||||| |||| |||||    
T  1626274 ctgaccaagcaacgcgcatatctatacaaaatca 1626241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 23477194 - 23477430
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggat 113  Q
    ||||||||||| ||||||||||| |||||||||||||||| | |||||||| ||||   ||||| ||||||| |||||||||||  |||  |||||| ||    
T  23477194 tatttgtattggctgcattgttgctaaaacaaatattcatatatgtgttgttggatactatgttccaacatgtttcaggcatctttgtataatgttgaat 23477293  T
Q  114 acgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttccttatcatg 213  Q
    || ||||||||||||| ||||| | |||| ||||||| |||  ||| || ||| | |||  || | ||||||||||||||||||| ||||||||||| |     
T  23477294 acaatgttccaacatcttggcacggttcaatgtgcctggttgtatgcctatttgtacgc-cgcctaatattatttaaggaaaccacatttccttatctta 23477392  T
Q  214 ctgaccaagctacgcgcatatctgtacataatcaattg 251  Q
     ||||||||| ||| |||||||| ||||  ||||||||    
T  23477393 ttgaccaagcaacgtgcatatctttacaggatcaattg 23477430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 25349480 - 25349623
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||| ||||| ||||||| |||||||||||||||| |||||||||||||| ||||  |||||| ||||||| || |||||| |  |||||||    
T  25349480 tgttggctatttatattgactgcattattgttaaaacaaatatccatgtttgtgttgttggatacaatgttccaacatgttttaggcatttatgtaagat 25349579  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||| ||| |||||||||||||||| | ||||||||||||    
T  25349580 gttggatatgatattccaacatcctggcatggttcagtgtgcct 25349623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 17850743 - 17850918
Alignment:
Q  72 aatgtttcaacatggttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcg 171  Q
    |||||| ||||||| ||||| |||||  ||||||| |||||||| |||||||||||||||  || | |||||||||||||  |||||||  |||| ||||    
T  17850743 aatgttccaacatgtttcagtcatctttgtaagattttggatacaatgttccaacatcctaacacggttcagtgtgccttagttcatgttagtttgtgcg 17850842  T
Q  172 catgcgttatattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
       || ||||||||||||||||||||||||||||||||| |  ||||||||| |||| ||||||| |||| |||||    
T  17850843 tgcgctttatattatttaaggaaaccatatttccttatcttattgaccaagcaacgcccatatctttacagaatca 17850918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 10339410 - 10339566
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagat 106  Q
    |||||| ||||||||||| ||||||| ||| ||||| |||||| |||| ||| | ||| ||||   ||||| ||||||| || |||||| || |||||||    
T  10339410 tgttgggtatttgtattggctgcattattgctaaaataaatatccatgattgcgatgttggatactatgttccaacatgttttaggcatttctgtaagat 10339509  T
Q  107 gttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctg 163  Q
    ||||||||||||||||||||||| || || | ||||||||||||||||| |||||||    
T  10339510 gttggatacgatgttccaacatcttgacacggttcagtgtgccttgttttatgtctg 10339566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 11667153 - 11667388
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| || |||||||| | |||||||||| | |||||||||||| |||   |||||| ||||||| ||| || |||||| ||||||    
T  11667153 tgttgggtatttgtattgactccattgttgattaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatgtgtttagacatctctgtaaga 11667252  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    |||||||||||||||||||||||| |||||   || |||||| || | |||||| || ||| | |||   |  | |||| ||||||||||   |||||||    
T  11667253 tgttggatacgatgttccaacatcatggcacagttaagtgtgtctgggttcatgcctatttgtacgcggaccctttattgtttaaggaaaaactatttcc 11667352  T
Q  206 ttatcatgctgaccaagctacgcgcatatctgtaca 241  Q
    ||||| |  ||||||||| |||||||||||| ||||    
T  11667353 ttatcttattgaccaagcaacgcgcatatctttaca 11667388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 12753871 - 12753728
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatattt 203  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| | |||  | ||  || | |||   | ||  ||||||||||||||||||||||    
T  12753871 gatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgggttcgagcctacttgtacgcgcaccttgaattatttaaggaaaccatattt 12753772  T
Q  204 ccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||||||| |  ||||||||| ||||||||||||| |||||||||    
T  12753771 ccttatcttattgaccaagcaacgcgcatatctgcacataatca 12753728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 20200339 - 20200483
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | |||| || |  || |||   |||||| ||||||| ||| ||||||||| |||||    
T  20200339 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgtt-gtataagttggaaccaatgttccaacatgtgtttaggcatctctgtaag 20200437  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||    
T  20200438 atgttggatacgatgttccaacatcctggcacggttcagtatgcct 20200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 24986892 - 24986751
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| ||||| |||||| | ||  |||||||| |||   |||||| ||||||| ||| ||||||||| ||||||    
T  24986892 tgttgggtatttgtattgactgcattattgctaaaataaatatccttgactgtgttgttggaaccaatgttccaacatgtgtttaggcatctctgtaaga 24986793  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtg 147  Q
    |||||||||| |||||||||||| |||||| | |||||||||    
T  24986792 tgttggatacaatgttccaacattctggcacggttcagtgtg 24986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 4246949 - 4246803
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | ||| |||||||| |||   |||||||||||||| ||| || | |||| ||||||    
T  4246949 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgtatgtgttgttggaaccaatgtttcaacatgtgtttagacgtctctgtaaga 4246850  T
Q  106 tgttggat--acgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||  |||||  ||||||||||||||| | || |||||||||    
T  4246849 tgttggatacacgatcctccaacatcctggcatggtttagtgtgcct 4246803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 20840513 - 20840658
Alignment:
Q  6 ctgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaa 103  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| | || | ||||  || |||   |||||| ||||||  ||| ||||||||| ||||    
T  20840513 ctgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgat-gtgtaagttggaaccaatgttccaacatatgtttaggcatctctgtaa 20840611  T
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||    
T  20840612 gatgttggatacgatgttccaacatcctgacacagttcagtgtgcct 20840658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 17838230 - 17838292
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    |||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  17838230 tgttgggtatttgtattggctgcattattgctaaaacaaatattcatgtttgtgttgttggat 17838292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 26971716 - 26971792
Alignment:
Q  75 gtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||| ||| |||| |||| | |||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  26971716 gtttcaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcct 26971792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 15803465 - 15803527
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggat 69  Q
    |||||| |||||| |||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  15803465 tgttgggtatttgcattggctgcattattgctaaaacaaatattcatgtttgtgttgttggat 15803527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 41330640 - 41330781
Alignment:
Q  14 tatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaagatgttggat 113  Q
    ||||||||||| ||||||||||| |||||||||||| |||| || || |||  |||   ||||| |||| || || |||||| | |  ||||| ||||||    
T  41330640 tatttgtattgactgcattgttgctaaaacaaatatccatgattttgatgttcgataccatgttccaacgtgttttaggcattttcacaagattttggat 41330739  T
Q  114 acgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
      ||||||||||||||||  || | |||||||||||||||||    
T  41330740 gtgatgttccaacatcctatcacggttcagtgtgccttgttt 41330781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 15803562 - 15803628
Alignment:
Q  181 tattatttaaggaaaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    |||||||||||||||||||||||||||||| |  ||||||| | | |||||||||| |||| |||||    
T  15803562 tattatttaaggaaaccatatttccttatcttattgaccaaacaatgcgcatatctttacagaatca 15803628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 22891145 - 22891195
Alignment:
Q  100 gtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||| |||||||||| ||||||||||||||||||| | ||||||||||||    
T  22891145 gtaagttgttggatactatgttccaacatcctggcacggttcagtgtgcct 22891195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 9452247 - 9452171
Alignment:
Q  75 gtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||| ||| |||| ||||  ||||||||||||||||||| |||||||| ||||||   ||||||||||||    
T  9452247 gtttcaacatgtgtttaggcgtctctataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 9452171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 13150133 - 13150057
Alignment:
Q  75 gtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||| ||| |||| |||| | |||||||||||| ||||| | ||||||||||||| | ||||||||||||    
T  13150133 gtttcaacatgtgtttaggcgtctctggaagatgttggatgcgatgcttcaacatcctggcacggttcagtgtgcct 13150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 8282731 - 8282680
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||||||||||||||||||||| ||   ||||||| |||||||||    
T  8282731 gatgttggatacgatgttccaacatcctgacacagttcagtgagccttgttt 8282680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 51471439 - 51471490
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||| || ||||||||||||||||| | ||||||||||| |||||    
T  51471439 gatgttggatatgaagttccaacatcctggcacggttcagtgtgccctgttt 51471490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 12759375 - 12759297
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg 85  Q
    |||||| ||||||||||   |||||| ||| |||||||||||| |||||||||| ||| |||| | ||||| |||||||    
T  12759375 tgttggttatttgtattagttgcattattgctaaaacaaatatccatgtttgtgatgttggatattatgttccaacatg 12759297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 13166303 - 13166261
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  13166303 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 13166261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 22347972 - 22348022
Alignment:
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||| |||||| ||||| | ||||||||||| |||||    
T  22347972 atgttggatacgatgttctaacatcttggcacggttcagtgtgccctgttt 22348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 7829 - 8059
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | | |||||||||| |||   |||||| ||||||| ||| | |||||||  |||||    
T  7829 tgttgggtatttgtattggctgcattattgctaaaacaaatatccttatttgtgttgttggaaccaatgttccaacatgtgtttaagcatctctataaga 7928  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttcc 205  Q
    ||||| ||||||||||| ||||||| ||||   |||||||||||| | |||||| || ||| | |||  ||  | |||| ||||||||||| ||||||||    
T  7929 tgttgcatacgatgttcgaacatcccggcactgttcagtgtgcctgggttcatgcctatttgtacgcccgctctttattgtttaaggaaacaatatttcc 8028  T
Q  206 ttatcatgctgaccaagctacgcgcatatct 236  Q
    ||||| |  ||||||||| |||| |||||||    
T  8029 ttatcttattgaccaagcaacgcacatatct 8059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 17375 - 17519
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | |||||||||||| |||   |||||| ||||||| ||| ||| ||||| ||||||    
T  17375 tgttgggtatttgtattgactgcattattgctaaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatgtgtttaggtatctctgtaaga 17474  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||| |||| ||||||||||||||||  || | ||||||||||||    
T  17475 tgttagatatgatgttccaacatcctaccacggttcagtgtgcct 17519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 26769 - 26913
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| | |||||||||||| |||   |||||| ||||||| ||| ||| ||||| ||||||    
T  26769 tgttgggtatttgtattgactgcattattgctaaaacaaatatccttgtttgtgttgttggaaccaatgttccaacatgtgtttaggtatctctgtaaga 26868  T
Q  106 tgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||| |||| ||||||||||||||||  || | ||||||||||||    
T  26869 tgttagatatgatgttccaacatcctaccacggttcagtgtgcct 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 6789 - 7029
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatg-gttcaggcatctccgtaaga 105  Q
    |||||| ||||||||||| || |||| ||| |||| ||||||| | |||||||||||| |||   |||||| ||||||| ||| || |||||  ||||||    
T  6789 tgttgggtatttgtattggctacattattgctaaagcaaatatccttgtttgtgttgttggaaccaatgttccaacatgtgtttagccatctttgtaaga 6888  T
Q  106 tgttggatacgatgttccaacatcc-tggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaaggaaaccatatttc 204  Q
    | ||||||| ||||||||||||||| ||||| | ||||||||| || | |||||| || ||| | |||  ||  | |||| ||||||||||  |||||||    
T  6889 ttttggatatgatgttccaacatccttggcacggttcagtgtgtctgggttcatgcctatttgtacgc--gccctttattgtttaaggaaataatatttc 6986  T
Q  205 cttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||| || |  ||||||||| ||| ||||| || |||| |||||    
T  6987 cttttcttattgaccaagcaacgggcatagctttacaaaatca 7029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 38215 - 38085
Alignment:
Q  5 actgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggttcaggcatctccgtaag 104  Q
    |||||||| ||||||||||| ||||||| ||| ||||||||||||  | ||||||| | | ||||  |||||| || ||||  ||| |||| |  |||||    
T  38215 actgttgggtatttgtattggctgcattattgctaaaacaaatatataagtttgtgatattggatacaatgttccatcatgtctcaagcatttatgtaag 38116  T
Q  105 atgttggatacgatgttccaacatcctggca 135  Q
    |||||||||||||||||||||||||||||||    
T  38115 atgttggatacgatgttccaacatcctggca 38085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 24928 - 25072
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgtt-gtaggatgtaatgtttcaacatg-gttcaggcatctccgtaag 104  Q
    |||||| ||||||||||| ||||||||||| |||||||||||| | ||||  |||  || |||   || ||||||||||| ||| |||| |||| | |||    
T  24928 tgttgggtatttgtattggctgcattgttgctaaaacaaatatccttgttc-tgtaagttggaaccaaagtttcaacatgtgtttaggcgtctctggaag 25026  T
Q  105 atgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||    
T  25027 atgttggatacgatgctccaacatcctggcacggttcagtgtgcct 25072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 15957 - 16112
Alignment:
Q  92 gcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatgtctgtttatgcgcatgcgttatattatttaag 191  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||| | |||||  ||  || | ||   ||  | |||| ||||||    
T  15957 gcatctctgtaagatgttggatacgatgttccaacatcctggcacggttcggtgtgcctgggttcattcctacttgtacgtgcgctctttattgtttaag 16056  T
Q  192 gaaaccatatttccttatcatgctgaccaagctacgcgcatatctgtacataatca 247  Q
    ||||| ||||||| ||||| |  ||||||||| | |||||||||| |||| |||||    
T  16057 gaaacaatatttcattatcttattgaccaagcaatgcgcatatctatacagaatca 16112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 1683 - 1762
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||||||| ||| |||| |||  ||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  1683 aatgtttcaacatgtgtttaggcgtctttgtaagatgttggatacgatgttccaacattctggcacggttcagtgtgcct 1762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 16641 - 16729
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgtttcatg 159  Q
    |||||||||||||| ||| ||||||||  |||||||||||||||||||| || ||||||||| || | ||||||||||||  |||||||    
T  16641 aatgtttcaacatgtgtttaggcatctttgtaagatgttggatacgatgatctaacatcctgacatggttcagtgtgcctgatttcatg 16729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 16318 - 16270
Alignment:
Q  102 aagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  16318 aagatgttggatacgatgttccaacatcctggcacggttcagtgtgcct 16270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 37434 - 37355
Alignment:
Q  72 aatgtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||||||| ||| |||| |||| |||| ||||||||||| |||||||||||||||| || | ||||||||||||    
T  37434 aatgtttcaacatgtgtttaggcgtctctgtaaaatgttggatacaatgttccaacatcctgacacggttcagtgtgcct 37355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 36649 - 36568
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatattcatgtttgtgttgtaggatgtaatgtttcaacatggtt 88  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||   ||||| ||||||||||    
T  36649 tgttgggtatttgtattggctgcattattgctaaaacaaatatccatgtttgtgatgttggataatatgttccaacatggtt 36568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 5778 - 5727
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||| |||||    
T  5778 gatgttggatatgatgttccaacatcctggcatggttcagtgtgccctgttt 5727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 12033 - 11982
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||| |||||    
T  12033 gatgttggatatgatgttccaacatcctggcatggttcagtgtgccctgttt 11982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 45316 - 45367
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgccttgttt 155  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||| |||||    
T  45316 gatgttggatacgatgttccaacatcttggcatggttcagtgtgccctgttt 45367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 47710 - 47785
Alignment:
Q  76 tttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||| ||| |||| |||| | |||||||||||||||||  ||||||||||||||| | ||||||||||||    
T  47710 tttcaacatgtgtttaggcgtctctggaagatgttggatacgatactccaacatcctggcacggttcagtgtgcct 47785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 88561 - 88511
Alignment:
Q  100 gtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    |||||||||||||||| |||||||||||||||| || | ||||||||||||    
T  88561 gtaagatgttggatacaatgttccaacatcctgacatggttcagtgtgcct 88511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 1319 - 1395
Alignment:
Q  75 gtttcaacatg-gttcaggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||||| ||| |||| |||| | ||||||||||||| |||| ||||||||||| ||| | ||||||||||||    
T  1319 gtttcaacatgtgtttaggcgtctctggaagatgttggatatgatgctccaacatcctagcatggttcagtgtgcct 1395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 9499 - 9439
Alignment:
Q  90 aggcatctccgtaagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 150  Q
    ||||||||| ||||| |||||||||| |||||||||| || ||||| | ||||||||||||    
T  9499 aggcatctctgtaaggtgttggatacaatgttccaacttcttggcacggttcagtgtgcct 9439  T

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Target: scaffold0359 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 2798 - 2756
Alignment:
Q  7 tgttggatatttgtattgtctgcattgttgttaaaacaaatat 49  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  2798 tgttgggtatttgtattggctgcattgttgctaaaacaaatat 2756  T

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Target: scaffold0480 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 11991 - 11946
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||    
T  11991 gatgttggacacgatgtttcaacatcctggcacggttcagtgtgcc 11946  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 50258 - 50303
Alignment:
Q  104 gatgttggatacgatgttccaacatcctggcaagattcagtgtgcc 149  Q
    |||||||||||||||||||||||||||| |||   |||||||||||    
T  50258 gatgttggatacgatgttccaacatcctagcacagttcagtgtgcc 50303  T

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