View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16911_low_3 (Length: 266)
Name: NF16911_low_3
Description: NF16911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16911_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 6916086 - 6915848
Alignment:
| Q |
18 |
agttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagca |
117 |
Q |
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| T |
6916086 |
agttcctgacccagcaggaagtggttcaatatatccaatcactcgtccatattgtccttgccctccagattgcttcttatgtaaataatcaaaatcagca |
6915987 |
T |
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| Q |
118 |
cgttgagtaacagtttctctgaagtttacccggggcgttccaactgtagcatcaaccccatactccatcttaatgcatttaacataaatatctaagtgta |
217 |
Q |
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| T |
6915986 |
cgttgagtaacagtttctctgaagtttacccggggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgta |
6915887 |
T |
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| Q |
218 |
gttctcccattccagaaataattgtttgcccactctctg |
256 |
Q |
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| T |
6915886 |
gttctcccattccagaaatgattgtttgcccactctctg |
6915848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 15039269 - 15039391
Alignment:
| Q |
52 |
ccaatcactcgtccatattgtccttgtcctccagattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacccggg |
151 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15039269 |
ccaatcacccgtccatattgtccttgccctccggattgcttcttatgtaaataatcaaaatcagcacgttgagtaacagtttctctgaagtttacacggg |
15039368 |
T |
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| Q |
152 |
gcgttccaactgtagcatcaacc |
174 |
Q |
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| T |
15039369 |
gctttccaactgtagcatcaacc |
15039391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
188 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaataattgt |
242 |
Q |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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