View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16911_low_4 (Length: 266)
Name: NF16911_low_4
Description: NF16911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16911_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21080691 - 21080932
Alignment:
| Q |
1 |
actaaccaactgaattataacaccctaacacacctcctaattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaagcttacca |
100 |
Q |
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| T |
21080691 |
actaaccaactgaattataacaccctaacacacctcctaattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaagcttacca |
21080790 |
T |
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| Q |
101 |
ttgttgacttgatccctaagaaaatgaaaatgtgtctcagtgtgttggttctgccatgagccactatatgcttagccatgtcaattacatacttgttgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21080791 |
ttgttgacttgatccctaagaaaatgaaaatgtgtctcagtgtgttggttctgccatgagccactatatgcttagccatttcaattacatacttgttgtc |
21080890 |
T |
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| Q |
201 |
aatcaacaattccattttcttatcttccttcatattcatctc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21080891 |
aatcaacaattccattttcttatcttccttcatattcatctc |
21080932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 28451018 - 28451088
Alignment:
| Q |
24 |
cctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaag |
93 |
Q |
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| T |
28451018 |
cctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaag |
28451088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 20418125 - 20418088
Alignment:
| Q |
34 |
ctcctaattcattagttagtgacttcaaccatgcctaa |
71 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
20418125 |
ctcctagttcattagttagtgacttcaaccatgcctaa |
20418088 |
T |
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