View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_10 (Length: 521)
Name: NF16912_high_10
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 40483717 - 40483225
Alignment:
| Q |
14 |
aggcacaacaaagatggttaattgttctctaaaaa-cagatggttaattttttattcacccacttcctgatatgcccctatgtatgcagtttcaatttag |
112 |
Q |
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| T |
40483717 |
aggcacaacaaagatggttaattgttctctaaaaaacagatggttaattttttattcacccacttccttatatgcccctatgtatgcagtttcaatttag |
40483618 |
T |
|
| Q |
113 |
attatcttgggggtgatgacattgcatttcatagccttacctattaaataatcatatcaattttaagtttgagctccttctacgaaatataacaattttt |
212 |
Q |
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| T |
40483617 |
attatcttgggggtgatgacattgcatttcatagccttacctattaaataatcatatcaattttaagtttgagctccttctacgaaatataacaattttt |
40483518 |
T |
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| Q |
213 |
gttgccttgtggtattttatcagatgatacgtaatgaatactttccaagttctaatatatattttgtaaaatcacagttgtcgttttgctactatcgttt |
312 |
Q |
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| T |
40483517 |
gttgccttg-ggtattttatcagatgatacgtaatgaatactttccaagttctaatatatattttgtaagatcacagttgtcgttttgctactatcgttt |
40483419 |
T |
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| Q |
313 |
tcctatggtcgtgtacgcattaatatatatgttatatatgagggagtcttttgtgatggattgtccacaaaagattttcttttgtatctgttagtgtgat |
412 |
Q |
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| T |
40483418 |
tcctatggtcgtgtacgcattaatatatatgttatatatgagggagtcttttgtgatggattgtcaacaaaagatttttttttgtatctgttagtgtgat |
40483319 |
T |
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| Q |
413 |
gtttgtttggctttgagtatggaacattaactgtggtattcagtggttcactgttctatggtgtgttgcacgtgggggcaaagaaagacatttt |
506 |
Q |
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| T |
40483318 |
gtttgtttggctttgagtatggaacattaactgtggtattcagtggttcgctgttctatggtgtgttgcacgtgggggtaaagaaagacatttt |
40483225 |
T |
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