View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_11 (Length: 508)
Name: NF16912_high_11
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 45 - 498
Target Start/End: Complemental strand, 2223882 - 2223448
Alignment:
| Q |
45 |
atgcatgtatatcattattttattataagtacgtacgtacctattgatctggaagttgcgagtactcctaaaacacgattcccattccaatcaatcactc |
144 |
Q |
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| T |
2223882 |
atgcatgtatatcatt---ttattataagtacgtac----ctattgatctggaagttgcgagtactcctaaaacacgattcccattccaatcaatcactc |
2223790 |
T |
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| Q |
145 |
ttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataattcagccaaaacaaagtgtttgatat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
2223789 |
ttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataatt-----------aattgttggatat |
2223701 |
T |
|
| Q |
245 |
ggtaccaaaagcagttcaaataccataaatgtattttgcttcttaattnnnnnnnnnncaaactattattctagttaattacttgttagataagcaatat |
344 |
Q |
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| T |
2223700 |
ggtaccaaaagcagttcaaataccataaatgtattttgcttcttaattaaaaaaaaaacaaaccattattctatttaattacttgttagataagcaatat |
2223601 |
T |
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| Q |
345 |
gcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttagtttgctta |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2223600 |
gcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttag-ttgctta |
2223502 |
T |
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| Q |
445 |
attgtaagtttctttatatctcatgagtcaccattaattaaccatcaccctatg |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2223501 |
attgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttatg |
2223448 |
T |
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