View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_13 (Length: 490)
Name: NF16912_high_13
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 472
Target Start/End: Complemental strand, 34978460 - 34978003
Alignment:
| Q |
11 |
gatgaagtaaaagagaatgtttctggggcgcatttgctcggataagctatgatgaaggtggtagaacaggctgatgttgtttcctcctgcggctgatatg |
110 |
Q |
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| T |
34978460 |
gatgaagtaaaagagaatgtttctggggcgcatttgctcggataagctatgatgaaggtggtagaacaggctgatgttgtttcctcctgcggctgatatg |
34978361 |
T |
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| Q |
111 |
gtgttctgagcgcatatataattccattgcaaactgaaggcaatttaagtgctctgattctgaagagccaaattgtaggcattccagttcctaactctaa |
210 |
Q |
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| T |
34978360 |
gtgttctgagcgcata----attccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccagttcccaactctaa |
34978265 |
T |
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| Q |
211 |
tgtgcgctgaactccaccgtcaccaggatgatttaaaacctgtaaaagtgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaa |
310 |
Q |
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| T |
34978264 |
tgtgcgctgaactccaccgtcaccaggatgatttaaaacctgtaaaagtgtggtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaa |
34978165 |
T |
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| Q |
311 |
ccaggtagatacactactagtacaataaattataaattacataaaacttcacnnnnnnnattttaaaatagacagaagggagatcaacagagaattaagg |
410 |
Q |
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| T |
34978164 |
ccaggtagatacactactaatacaataaattataaattatataaaacttcactttttttattttaaaatagatagaagggagatcaacagagaattaagg |
34978065 |
T |
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| Q |
411 |
acttgcaatccttgaaaggaaaactcacaacatgttgcaaacaatacatcacaaataactca |
472 |
Q |
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| T |
34978064 |
acttgcaatccttgaaaggaaaactcacaacatgttgcaaacaatacatcacaaataactca |
34978003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 34992943 - 34992809
Alignment:
| Q |
98 |
tgcggctgatatggtgttctgagcgcatatataattccattgcaaactgaaggcaatttaagtgctctgattctgaagagccaaattgtaggcattccag |
197 |
Q |
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| T |
34992943 |
tgcggctgatatggtgttctgagcacata----attccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccag |
34992848 |
T |
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| Q |
198 |
ttcctaac-tctaatgtgcgctgaactccaccgtcacca |
235 |
Q |
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| T |
34992847 |
ttcctaacttctaatgtgcgttcgactccaccatcacca |
34992809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 259 - 434
Target Start/End: Complemental strand, 34992120 - 34991949
Alignment:
| Q |
259 |
tgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaaccaggtagatacactactagtacaataaattataaattacataaaact |
358 |
Q |
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| T |
34992120 |
tgtagcatagcacaaagcattgatacggaaatgatatcgtcaacctaataaaccaggtagatacacta---gtacagcaaattataaattacataaaact |
34992024 |
T |
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| Q |
359 |
tcacnnnnnnnattttaaaatagacagaagggagatcaacagagaattaaggacttgcaatccttgaaaggaaaac |
434 |
Q |
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| T |
34992023 |
tca-attttttattttaaaatagatagaagggagatcaacagagaattaaggtcttacaatccttgaaaggaaaac |
34991949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 34986124 - 34986023
Alignment:
| Q |
98 |
tgcggctgatatggtgttctgagcgcatatataattccattgcaaactgaaggcaatttaagtgctctgattctgaagagccaaattgtaggcattccag |
197 |
Q |
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| T |
34986124 |
tgcggctgatatggtgttctgagcacata----attccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccag |
34986029 |
T |
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| Q |
198 |
ttccta |
203 |
Q |
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| T |
34986028 |
ttccta |
34986023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 34986669 - 34986610
Alignment:
| Q |
246 |
aaacctgtaaaagtgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactca |
305 |
Q |
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| T |
34986669 |
aaacctgtaaaagtgtagcatagtacaaagcattgatacgaaaatgataccgtcaactca |
34986610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 34985300 - 34985219
Alignment:
| Q |
379 |
tagacagaagggagatcaacagagaattaaggacttgcaatccttgaaaggaaaa--ctcacaacatgttgcaaacaataca |
458 |
Q |
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| T |
34985300 |
tagatagaagggagatcaacagagaattaaggtcttataatccttgaaaggaaaactctcacaacatgttgcatacaataca |
34985219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 34985365 - 34985295
Alignment:
| Q |
251 |
tgtaaaagtgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaaccaggtagata |
321 |
Q |
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| T |
34985365 |
tgtaaaagtgtagcatagtacagagcgttgatacgaaaatgacgccatcaactcaataaaccaggtagata |
34985295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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