View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_20 (Length: 437)
Name: NF16912_high_20
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_20 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 21447452 - 21447037
Alignment:
| Q |
7 |
gaagcaaaggccaaaaggaaagcaaaaaagatggctggtgtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaacctgata |
106 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21447452 |
gaagcgaaggccaaaaagaaagcaaaaaagatggctggtgtgtcacaatcacttcccaaggatgaatcaactgatggtcagaattctagcaaacctgata |
21447353 |
T |
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| Q |
107 |
cacggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacag |
206 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447352 |
cacggacatcagagactggctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacag |
21447253 |
T |
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| Q |
207 |
tcttgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtcaaaacttgatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447252 |
tcttgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtcaaaacttgatt |
21447153 |
T |
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| Q |
307 |
acatgtccatta-nnnnnnnccgtattgatgtcaatatatatattgctgttttttccaatccactaacaataataaccgggataatcatgcagatggggc |
405 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447152 |
acatgtccattattttttttccgcattgatgtcaatatatatattgctgttttttccaatccactaacaataataaccgggataatcatgcagatggggc |
21447053 |
T |
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| Q |
406 |
tcatgaagaaacatcc |
421 |
Q |
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| T |
21447052 |
tcatgaagaaacatcc |
21447037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 4084 - 4368
Alignment:
| Q |
7 |
gaagcaaaggccaaaaggaaagcaaaaaagatggctggtgtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaacctgata |
106 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4084 |
gaagcgaaggccaaaaagaaagcaaaaaagatggctggtgtgtcacaatcacttcccaaggatgaatcaactgatggtcagaattctagcaaacctgata |
4183 |
T |
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| Q |
107 |
cacggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacag |
206 |
Q |
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| T |
4184 |
cacggacatcagagactggctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacag |
4283 |
T |
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| Q |
207 |
tcttgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgta |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284 |
tcttgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgta |
4368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 40685164 - 40685453
Alignment:
| Q |
6 |
agaagcaaaggccaaaaggaaagcaaaaaagatggctggtgtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaacctgat |
105 |
Q |
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|||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||||| || |||||||||| |||||| ||||| | ||||||||| |||| |
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| T |
40685164 |
agaagcaaaggcaaaaaggagagcgaaaaagatggctggtgtatcacagtcactacctaaggatgaagtaactgaaggtcacacctctagcaaatttgat |
40685263 |
T |
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| Q |
106 |
acacggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgaca |
205 |
Q |
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| T |
40685264 |
atacatacattggaggcgggctgtggtgcgactgaacggttgaattcaaaacaaatggctgttgaaggattcaaggcccagagtgaaatggtgattgaca |
40685363 |
T |
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| Q |
206 |
gtcttgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtc |
295 |
Q |
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| T |
40685364 |
gcctagataggctaatcacttcatgggaagaacggaaagagtccgttgttgttgagggtgttcacttgagtctcaactttgttgtatgtc |
40685453 |
T |
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