View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_high_22 (Length: 432)

Name: NF16912_high_22
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_high_22
NF16912_high_22
[»] chr1 (5 HSPs)
chr1 (143-336)||(45040921-45041114)
chr1 (21-124)||(45040791-45040895)
chr1 (193-334)||(45035717-45035858)
chr1 (158-250)||(46175121-46175219)
chr1 (178-250)||(45043035-45043107)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 143 - 336
Target Start/End: Original strand, 45040921 - 45041114
Alignment:
Q  143 caataggcaactaccatgattatttttctgattaatttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45040921 caataggcaactaccatgattatttttctgattaatttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgct 45041020  T
Q  243 tacggcactgttgtaataaggattgtactgtggtttcatctgatgattataataagcaggtgcaccatagaaaatgaaaggatcaattatcaca 336  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45041021 tacggcactgttgtaataaggattgtactgtggtttcatccgatgattataataagcaggtgcaccatagaaaatgaaaggatcaattatcaca 45041114  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 45040791 - 45040895
Alignment:
Q  21 aagtttagagtaacatattagtcaagaatgtattacgtacataatgaac-tagcctcatattatataatcaacacgatatacatcaagctacttttacag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45040791 aagtttagagtaacatattagtcaagaatgtattacgtacataatgaaaatagcctcatattatataatcaacacgatatacatcaagctacttttacag 45040890  T
Q  120 ataat 124  Q
    |||||    
T  45040891 ataat 45040895  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 45035717 - 45035858
Alignment:
Q  193 atataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcactgttgtaataaggattgtactgtggtttcatctgatgattat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| || | |||||| ||||| ||||||||||||||||    
T  45035717 atataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac---ggtagtatgaattgtattgtggattcatctgatgattat 45035813  T
Q  293 aata---agcaggtgcaccatagaaaatgaaaggatcaattatca 334  Q
    ||||   || ||||| ||||||||  |||||||||| ||||||||    
T  45035814 aataggtagtaggtgtaccatagagcatgaaaggattaattatca 45035858  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 46175121 - 46175219
Alignment:
Q  158 atgattatttttctgattaa------tttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac 250  Q
    ||||||||||||||||||||      |||||| |||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  46175121 atgattatttttctgattaaattttttttttatcaaacatagtatataaaatttagaggatgacacagccattaggatcctcttcaacgcttatggcac 46175219  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 45043035 - 45043107
Alignment:
Q  178 tttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac 250  Q
    |||||| |||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  45043035 tttttatcaaacatagtatataaaatttagaggatgacacagccattaggatcctcttcaacgcttatggcac 45043107  T

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