View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_23 (Length: 410)
Name: NF16912_high_23
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_23 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 758629 - 758221
Alignment:
| Q |
1 |
tcttgttgatctgttttagtttaccacttcttatttcattcttctcatgaacattaagattctagcataaatacatgttggaatgattgattaatttaat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
758629 |
tcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaagattctagcataaatacatgttggaatgattgattaatt-aat |
758531 |
T |
|
| Q |
101 |
taatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaattattaacaacaaccttaatcattacaatttgtgatatcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
758530 |
taatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaattatcaacaacaaccttaatcattacaatttgtgatatcat |
758431 |
T |
|
| Q |
201 |
taccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgataaatagaacagaatggaagaggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758430 |
taccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgataaatagaacagaatggaagaggac |
758331 |
T |
|
| Q |
301 |
aaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcaccattgttgtctcaagttaattaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758330 |
aaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcaccattgttgtctcaagttaattaaa |
758231 |
T |
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| Q |
401 |
gtttcttaca |
410 |
Q |
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|||||||||| |
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| T |
758230 |
gtttcttaca |
758221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 36988742 - 36989150
Alignment:
| Q |
1 |
tcttgttgatctgttttagtttaccacttcttatttcattcttctcatgaacattaagattctagcataaatacatgttggaatgattgattaatttaat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
36988742 |
tcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaagattctagcataaatacatgttggaataattgattaatt-aat |
36988840 |
T |
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| Q |
101 |
taatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaattattaacaacaaccttaatcattacaatttgtgatatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988841 |
taatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaattattaacaacaaccttaatcattacaatttgtgatatcat |
36988940 |
T |
|
| Q |
201 |
taccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgataaatagaacagaatggaagaggac |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988941 |
taccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaagtgagaaacacaacatgatgataaatagaacagaatggaagaggac |
36989040 |
T |
|
| Q |
301 |
aaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcaccattgttgtctcaagttaattaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989041 |
aaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcaccattgttgtctcaagttaattaaa |
36989140 |
T |
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| Q |
401 |
gtttcttaca |
410 |
Q |
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|||||||||| |
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| T |
36989141 |
gtttcttaca |
36989150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 37014181 - 37014589
Alignment:
| Q |
1 |
tcttgttgatctgttttagtttaccacttcttatttcattcttctcatgaacattaagattctagcataaatacatgttggaatgattgattaatttaat |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
37014181 |
tcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaagattctagcataaatacatgttggaataattgattaatt-aat |
37014279 |
T |
|
| Q |
101 |
taatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaattattaacaacaaccttaatcattacaatttgtgatatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014280 |
taatttgattagcataactaagatctagcctccatgagtcatcataattaatatattaattattaacaacaaccttaatcattacaatttgtgatatcat |
37014379 |
T |
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| Q |
201 |
taccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgataaatagaacagaatggaagaggac |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014380 |
taccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaagtgagaaacacaacatgatgataaatagaacagaatggaagaggac |
37014479 |
T |
|
| Q |
301 |
aaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcaccattgttgtctcaagttaattaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014480 |
aaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcaccattgttgtctcaagttaattaaa |
37014579 |
T |
|
| Q |
401 |
gtttcttaca |
410 |
Q |
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|||||||||| |
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| T |
37014580 |
gtttcttaca |
37014589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 36443693 - 36443639
Alignment:
| Q |
155 |
attaattattaacaacaaccttaatcattacaatttgtgatatcattaccaataa |
209 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
36443693 |
attaattattaacaacaaccttagttattacaatttgtgatatcattaccaataa |
36443639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19181008 - 19180933
Alignment:
| Q |
1 |
tcttgttgatctgttttagtttaccacttcttatttcattcttctcatgaacattaagattctagcataaatacat |
76 |
Q |
| |
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||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
19181008 |
tcttgttgatctgttttagattatcacttcttacttcattcttctcatgaacactaagattctagcatacatacat |
19180933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 19180896 - 19180840
Alignment:
| Q |
354 |
atcaaattcaaagccataatcaccattgttgtctcaagttaattaaagtttcttaca |
410 |
Q |
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||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
19180896 |
atcaaattcaaagtcttaagcacaattgttgtctcaagttaattaaagtttcttaca |
19180840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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