View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16912_high_28 (Length: 390)
Name: NF16912_high_28
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 50531465 - 50531268
Alignment:
| Q |
19 |
aaaggacttgtggattaagttatccacttaatgcataacatggttagaannnnnnnnnnnctttggtaaacacggtcagcaatctattatggctaaagga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50531465 |
aaaggacttgtggattaagttatccacttaatgcataacatggttagaattttttttt--ctttggtaaacacggtcagcaatctattatggctaaagga |
50531368 |
T |
|
| Q |
119 |
atcaattttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtatagacttcaaatttcatttccgtaagc |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50531367 |
atcaaatttttaaaatttaaggaaagtcctcagaaatttgacttgtaataaaagttttgagctgtaaaaggtatagacttcaaatttcatttccgtaagc |
50531268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 235 - 349
Target Start/End: Complemental strand, 50531225 - 50531111
Alignment:
| Q |
235 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaacgatggtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50531225 |
ttgaatgaaggtcatatttacttgcatgcgaccaatctaagtggtaagggtttgtatttaagtaaatagttttctttttaacaaaaataaaatgatggtt |
50531126 |
T |
|
| Q |
335 |
aaaggttcatttcat |
349 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
50531125 |
aaaggttcatttcat |
50531111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University