View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_33 (Length: 364)
Name: NF16912_high_33
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 35 - 346
Target Start/End: Complemental strand, 3651526 - 3651210
Alignment:
| Q |
35 |
aattgtttatttgtttcttatacatccctgtttaagaaaaaataaataaa-------ccttaaaggtttgatgcggatatgatagaattagtaggtgaaa |
127 |
Q |
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| T |
3651526 |
aattgtttattt-tttcttatacatccttgtttaagaaaaaatataaaaaaaaaaatccttaaaagtttgatgcggatatgatagaattagtaggtgaaa |
3651428 |
T |
|
| Q |
128 |
tagagctcatatggaatttaattagtcttaagaaaaatgtttaacatttctactttgtggcattgttgtttcttctagaacccctaaccatatcaaaatc |
227 |
Q |
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| T |
3651427 |
tagagctcatatgaaatttaattagtcttaagaaaaatgtttaacatttcttctttgtggcattgttgtttcttctagaacccctaaacatatcaaaatc |
3651328 |
T |
|
| Q |
228 |
gattgccacgttttctgttttaagatacacatgcaactctttcaattcatttcaattactagaattaattagcttcatgatattcttaccaaccccattg |
327 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3651327 |
gattgccac-ttttctgttttaagatacacatgcaactctttcactttattttcattactataattaattagcttcatgatattcttaccaaccccattg |
3651229 |
T |
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| Q |
328 |
acgtgtttgacatccactt |
346 |
Q |
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|||| |||||||||||||| |
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| T |
3651228 |
acgtttttgacatccactt |
3651210 |
T |
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