View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_37 (Length: 335)
Name: NF16912_high_37
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 38900431 - 38900122
Alignment:
| Q |
11 |
cacagagccaacttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaa |
110 |
Q |
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| T |
38900431 |
cacagagccaacttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaa |
38900332 |
T |
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| Q |
111 |
cacgtttataccctttcaatgaatnnnnnnntctttcttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctatt |
210 |
Q |
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| T |
38900331 |
cacgtttataccctttcaatgaataaaaaaatcttccttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctatt |
38900232 |
T |
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| Q |
211 |
ccccaaaacctctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaatatagtgatgcaaagcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900231 |
ccccaaaacctctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaatatagtgatgcaaagcc |
38900132 |
T |
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| Q |
311 |
tcgcagaaaa |
320 |
Q |
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|| ||||||| |
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| T |
38900131 |
tcacagaaaa |
38900122 |
T |
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