View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_38 (Length: 335)
Name: NF16912_high_38
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 111 - 318
Target Start/End: Complemental strand, 38752340 - 38752130
Alignment:
| Q |
111 |
aatatatttgacaaaatcacgatggcatcgaggttttgtttaagattcaaagtgtagt---ttttgccgaaaccaagacgtggcaaactgttattctgtc |
207 |
Q |
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| T |
38752340 |
aatatatttgacaaaatcacgatggcatcgaggttttgtttaagattcaaagtgtagtagtttttgccgaaaccaagacgtggcaaactgttattctgtc |
38752241 |
T |
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| Q |
208 |
aaattcgcgcagttaatatagttggtgtattattgatgcactggtttgagtttctaataaaattttggctattaaaagagaaaaaatacataagcattgt |
307 |
Q |
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| T |
38752240 |
aaattcgcgcagttaatatagttggtgtattattaatgcactggtttgagtttctaataaaattttggctattaaaagagaaaaaatacataagcattgt |
38752141 |
T |
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| Q |
308 |
gttgatctatg |
318 |
Q |
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||||||||||| |
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| T |
38752140 |
gttgatctatg |
38752130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38752460 - 38752377
Alignment:
| Q |
1 |
tgaaaaccctagatggtatacgcttgcannnnnnnnctcttcataattgcaaagaagaatttaaattaattaattaacaatagt |
84 |
Q |
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|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752460 |
tgaaaaccctagatggtatacgtttacattttttttctcttcataattgcaaagaagaatttaaattaattaattaacaatagt |
38752377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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