View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_39 (Length: 333)
Name: NF16912_high_39
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 7523724 - 7524029
Alignment:
| Q |
12 |
atgaacaaatggatttgactctttacctgttccaagatccttaatttttccaccagaattatcaacattataagctgttgtcatcaaagcagatttaatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523724 |
atgaacaaatggatttgactctttacctgttccaagatccttaatttttccaccagaattatcaacattataagctgttgtcatcaaagcagatttaatt |
7523823 |
T |
|
| Q |
112 |
gcagctggtgaccattctggataagctttcctaagcaatgcggcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaactcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523824 |
gcagctggtgaccattctggataagctttcctaagcaacgcggcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaactcaa |
7523923 |
T |
|
| Q |
212 |
ctctcctaggatcaatctccaaatcagtgggacctactttcccagtccaccctgctaaaatgttaacaccaggagctataacatctggtttaagaatctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7523924 |
ctctcctaggatcaatctccaaatcagtgggacccactttcccagtccaccctgctaaaatgttaacaccaggagctatgacatctggtttaagaatctc |
7524023 |
T |
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| Q |
312 |
tgcagt |
317 |
Q |
| |
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|||||| |
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| T |
7524024 |
tgcagt |
7524029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 3207919 - 3207966
Alignment:
| Q |
160 |
ccactaacatgaggacatgacatagaagtacctgaaattatgttaaac |
207 |
Q |
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| T |
3207919 |
ccactaagatgaggacatgacattgaggtacctgaaattatgttaaac |
3207966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 366786 - 366840
Alignment:
| Q |
154 |
gcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaact |
208 |
Q |
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||||||||||| ||||||||||||||||| ||||| || |||| |||||||||| |
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| T |
366786 |
gcgattccacttacatgaggacatgacattgaagttccggaaaacatgttaaact |
366840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 46215224 - 46215170
Alignment:
| Q |
154 |
gcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaact |
208 |
Q |
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||||||||||| ||||||||||||||||| ||||| || || | ||||||||||| |
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| T |
46215224 |
gcgattccacttacatgaggacatgacatcgaagttccggagagtatgttaaact |
46215170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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