View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_51 (Length: 286)
Name: NF16912_high_51
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 27180942 - 27181141
Alignment:
| Q |
17 |
agtaactctatcttcactcaaatcaaaactactttctctcacaaattttatacttttgttttactgaaaaaataattcttttttgatttcagatttgaag |
116 |
Q |
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| T |
27180942 |
agtaactctatcttcactcaaatcaaaactactttctctcacaaattttatgcttttgttttactgaaaaaataattcttttttgatttcagatttgaag |
27181041 |
T |
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| Q |
117 |
gaaatagcatcgatcattgaaactggttccaacttgaaggaagttcgcaaaatttctcgtgcagtgcgccttactttggcgttaaggtccaaactcactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27181042 |
gaaatagcatcgatcattgaaactggttccaacttgaaggaagttcgcaaaatttctcgtgctgtgcgccttactttggcgttaaggtccaaactcactg |
27181141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 8383083 - 8382884
Alignment:
| Q |
17 |
agtaactctatcttcactcaaatcaaaactactttctctcacaaattttatacttttgttttactgaaaaaataattcttttttgatttcagatttgaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8383083 |
agtaactctatcttcactcaaatcaaaactactttctctcacaaattttatgcttttgttttactgaaaaaataattcttttttgatttcagatttgaag |
8382984 |
T |
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| Q |
117 |
gaaatagcatcgatcattgaaactggttccaacttgaaggaagttcgcaaaatttctcgtgcagtgcgccttactttggcgttaaggtccaaactcactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8382983 |
gaaatagcatcgatcattgaaactggttccaacttgaaggaagttcgcaaaatttctcgtgctgtgcgccttactttggcgttaaggtccaaactcactg |
8382884 |
T |
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