View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_high_52 (Length: 278)

Name: NF16912_high_52
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_high_52
NF16912_high_52
[»] chr1 (23 HSPs)
chr1 (44-223)||(32882564-32882744)
chr1 (44-204)||(34775089-34775249)
chr1 (49-211)||(46768394-46768548)
chr1 (73-235)||(10785194-10785355)
chr1 (180-231)||(24659119-24659170)
chr1 (130-211)||(31290809-31290888)
chr1 (113-210)||(16148987-16149083)
chr1 (112-204)||(41126261-41126353)
chr1 (180-231)||(7857844-7857895)
chr1 (112-231)||(11439790-11439913)
chr1 (130-219)||(16577462-16577551)
chr1 (47-172)||(32863253-32863378)
chr1 (184-231)||(46814310-46814357)
chr1 (130-204)||(27102410-27102484)
chr1 (190-235)||(31585608-31585652)
chr1 (187-231)||(27031687-27031730)
chr1 (44-87)||(9313044-9313087)
chr1 (185-231)||(24449774-24449819)
chr1 (185-230)||(5459354-5459398)
chr1 (185-230)||(46692663-46692707)
chr1 (150-231)||(4430880-4430963)
chr1 (47-87)||(38546890-38546930)
chr1 (187-231)||(41920649-41920692)
[»] chr2 (22 HSPs)
chr2 (45-235)||(10173284-10173473)
chr2 (109-223)||(12343017-12343130)
chr2 (186-235)||(14106367-14106416)
chr2 (49-231)||(7696151-7696333)
chr2 (131-231)||(16952173-16952274)
chr2 (131-231)||(17022838-17022939)
chr2 (131-231)||(17060144-17060245)
chr2 (49-211)||(34230413-34230573)
chr2 (186-231)||(7460867-7460912)
chr2 (130-199)||(41086579-41086648)
chr2 (44-172)||(4974994-4975122)
chr2 (44-172)||(4992902-4993030)
chr2 (146-234)||(20572260-20572346)
chr2 (180-231)||(7874482-7874532)
chr2 (185-231)||(387366-387411)
chr2 (185-231)||(39338709-39338754)
chr2 (44-87)||(4472277-4472320)
chr2 (185-231)||(14405389-14405436)
chr2 (185-231)||(10524292-10524337)
chr2 (45-87)||(37770355-37770397)
chr2 (180-223)||(5254452-5254493)
chr2 (50-94)||(41113450-41113494)
[»] scaffold0050 (1 HSPs)
scaffold0050 (50-211)||(36920-37078)
[»] chr4 (20 HSPs)
chr4 (133-235)||(19673285-19673387)
chr4 (48-211)||(49747739-49747901)
chr4 (112-211)||(22810932-22811029)
chr4 (47-211)||(39420743-39420906)
chr4 (55-205)||(38636948-38637096)
chr4 (133-235)||(19815014-19815116)
chr4 (49-217)||(19311075-19311242)
chr4 (112-235)||(25753357-25753483)
chr4 (182-229)||(31050502-31050549)
chr4 (144-211)||(48098546-48098613)
chr4 (180-231)||(35341179-35341229)
chr4 (185-231)||(2825974-2826019)
chr4 (185-231)||(8255219-8255264)
chr4 (185-231)||(8268637-8268682)
chr4 (150-231)||(16832829-16832913)
chr4 (180-235)||(49528257-49528315)
chr4 (185-232)||(8705988-8706034)
chr4 (185-227)||(20464786-20464827)
chr4 (185-231)||(30964629-30964674)
chr4 (48-80)||(46487621-46487653)
[»] chr7 (17 HSPs)
chr7 (44-231)||(3478541-3478726)
chr7 (67-233)||(24324525-24324691)
chr7 (159-230)||(3867309-3867379)
chr7 (180-231)||(34390153-34390204)
chr7 (142-231)||(6716538-6716628)
chr7 (142-231)||(8745342-8745433)
chr7 (185-229)||(35745666-35745710)
chr7 (112-205)||(1321011-1321105)
chr7 (185-231)||(47325729-47325774)
chr7 (186-231)||(6585073-6585118)
chr7 (112-204)||(33719183-33719276)
chr7 (179-231)||(38306453-38306504)
chr7 (48-91)||(23983574-23983617)
chr7 (185-231)||(31971978-31972023)
chr7 (194-235)||(33435297-33435337)
chr7 (44-81)||(36674810-36674847)
chr7 (158-231)||(44353380-44353453)
[»] chr5 (15 HSPs)
chr5 (44-234)||(26045667-26045859)
chr5 (75-207)||(21398054-21398186)
chr5 (130-231)||(7161805-7161905)
chr5 (112-231)||(14302215-14302337)
chr5 (130-211)||(33258669-33258750)
chr5 (44-231)||(13953952-13954140)
chr5 (67-193)||(33109927-33110050)
chr5 (179-234)||(34378287-34378341)
chr5 (44-224)||(7682750-7682930)
chr5 (130-199)||(25992233-25992302)
chr5 (44-140)||(26405252-26405347)
chr5 (109-226)||(7391766-7391884)
chr5 (187-235)||(698549-698596)
chr5 (44-93)||(24071965-24072014)
chr5 (112-231)||(8297657-8297781)
[»] chr8 (19 HSPs)
chr8 (44-232)||(10248269-10248460)
chr8 (44-210)||(17656440-17656606)
chr8 (104-207)||(43312402-43312505)
chr8 (44-211)||(12197779-12197945)
chr8 (44-211)||(12442207-12442373)
chr8 (185-235)||(9519688-9519737)
chr8 (182-231)||(38577630-38577679)
chr8 (187-234)||(34388852-34388898)
chr8 (180-223)||(35816085-35816128)
chr8 (186-232)||(12898120-12898165)
chr8 (185-231)||(31207206-31207251)
chr8 (44-211)||(8862325-8862494)
chr8 (185-231)||(24995238-24995283)
chr8 (185-235)||(32066139-32066188)
chr8 (186-231)||(15821224-15821269)
chr8 (158-246)||(16457292-16457380)
chr8 (158-231)||(20138618-20138691)
chr8 (112-204)||(22325867-22325957)
chr8 (179-231)||(37986696-37986747)
[»] chr3 (24 HSPs)
chr3 (47-211)||(50518796-50518956)
chr3 (112-235)||(37123565-37123691)
chr3 (49-172)||(12086491-12086614)
chr3 (180-231)||(23328189-23328240)
chr3 (51-204)||(14194152-14194300)
chr3 (118-231)||(7105032-7105145)
chr3 (130-207)||(28937502-28937579)
chr3 (130-235)||(4170929-4171035)
chr3 (180-231)||(40023411-40023462)
chr3 (179-229)||(19176698-19176747)
chr3 (151-231)||(14879625-14879708)
chr3 (130-203)||(33143740-33143813)
chr3 (182-231)||(45398987-45399036)
chr3 (158-231)||(47235890-47235962)
chr3 (49-202)||(48893062-48893214)
chr3 (123-231)||(43012567-43012674)
chr3 (130-209)||(14755051-14755129)
chr3 (185-235)||(17551140-17551189)
chr3 (50-208)||(25647901-25648054)
chr3 (185-231)||(20611974-20612019)
chr3 (45-91)||(32010117-32010163)
chr3 (130-171)||(32010012-32010053)
chr3 (155-235)||(39021091-39021172)
chr3 (50-95)||(46358092-46358137)
[»] scaffold0063 (1 HSPs)
scaffold0063 (132-235)||(58312-58418)
[»] chr6 (5 HSPs)
chr6 (150-231)||(3880405-3880490)
chr6 (134-208)||(20701594-20701668)
chr6 (44-93)||(17278166-17278215)
chr6 (185-231)||(14663269-14663314)
chr6 (175-229)||(15120432-15120486)
[»] scaffold1384 (1 HSPs)
scaffold1384 (113-208)||(1428-1523)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 32882744 - 32882564
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||| ||||||||||| || || ||||||||||||||| |||||||||||||| || || |||| || ||||||| |  |||||| ||||||| ||| ||    
T  32882744 ggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactcc 32882645  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcac-ccccaaagaacacccctcaaaa 223  Q
    ||||||||||||| ||||||||| |||||  ||||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  32882644 ttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccccaacgaacacccctcaaaa 32882564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 34775249 - 34775089
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||| |||||||||||||| || ||||||||||||||||||||| | |||    || || |||| || ||||||||| |||| |  ||||||||||| ||    
T  34775249 ggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacctaaaacagactcc 34775150  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc 204  Q
    |||||||||||||| |||||||||||||   || |||| | || |||||||||||||||||    
T  34775149 ttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcacccc 34775089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 46768548 - 46768394
Alignment:
Q  49 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 148  Q
    ||||| |||||||| || ||||||||||||||| ||||| |||||||| || || |||| || |||||| || ||||||  ||||||||||| |||||||    
T  46768548 cgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcac 46768449  T
Q  149 gaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||||||||||||        ||||  |||||||   |||||||||||||||||||||||||||    
T  46768448 gaaaacgaccac--------cgatatccaacactgcccatcgtcactactcacccccaaagaa 46768394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 10785194 - 10785355
Alignment:
Q  73 ataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgat 172  Q
    ||||||||||||||| ||||||   || || |||| ||||||||||||||| | |   |||||||||| ||||||||||||||||  ||| |||||||||    
T  10785194 ataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgat 10785293  T
Q  173 ccccaacaccatccatcgtcactactca-cccccaaagaacacccctcaaaataaaactctcag 235  Q
      |||  |||| |||||||||||||||| ||| |||  ||||||||||||||  ||||||||||    
T  10785294 atcca--accacccatcgtcactactcatcccgcaagaaacacccctcaaaaataaactctcag 10785355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 24659170 - 24659119
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  24659170 accacccatcgtcactactcacccccaaataacacccctcaaaataaaactc 24659119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 31290809 - 31290888
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |||  |||||  |||||||||||||||||||||| |||||||    
T  31290809 ctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaac--catccatcgtcactactcaccctcaaagaa 31290888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 16149083 - 16148987
Alignment:
Q  113 aaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaaga 210  Q
    |||||||| ||||||  ||||||||||| |||||| | ||||||| |||| |||||||||  |||| | || ||||||||||||||||||||||||||    
T  16149083 aaaatacacgtcaccacctaaaacagacaccttcatgtaaacgactactg-aaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 41126261 - 41126353
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaac-gaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc 204  Q
    |||||||||| |||||  ||||||||||||| |||||||||||  |||||||| ||||||||  ||| ||||| ||||||||||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactgt-aaaacgatatccatcaccacccatcgtcactactcacccc 41126353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 7857895 - 7857844
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  7857895 accacccatcgccactactcacccccatagaacacccctcaaaataaaactc 7857844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 11439790 - 11439913
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactact-cacccccaaag- 209  Q
    ||||||||| ||||||  ||||||||||  ||||||||||| | ||||| ||||||| |||  |||||||||   |||||||||||| |||||||||||     
T  11439790 caaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaaga 11439889  T
Q  210 --aacacccctcaaaataaaactc 231  Q
      ||||||||||| ||| ||||||    
T  11439890 aaaacacccctcagaattaaactc 11439913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 16577551 - 16577462
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctc 219  Q
    ||||||||||| | ||||||||||||||||||  ||||| |||  |||  ||||| ||||||| |||||||| || ||||||||||||||    
T  16577551 ctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctc 16577462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 32863253 - 32863378
Alignment:
Q  47 gtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttc 146  Q
    |||||||||||||||| || | |||||||||||||   ||| ||||||   || || |||| || ||| ||||| ||||||| ||||||||||  ||| |    
T  32863253 gtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctcc 32863352  T
Q  147 acgaaaacgaccactgtaaaaacgat 172  Q
    ||||||||||||| |||||| |||||    
T  32863353 acgaaaacgaccattgtaaacacgat 32863378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 46814310 - 46814357
Alignment:
Q  184 tccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  46814310 tccatcgtcactactcacctccaaataacacccctcgaaataaaactc 46814357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 27102484 - 27102410
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc 204  Q
    ||||||||||  | |||||||||||  |||||||||||||||   |||||||||  |||||||||||||||||||    
T  27102484 ctaaaacagatactttcacgaaaacagccactgtaaaaacgaaatccaacaccactcatcgtcactactcacccc 27102410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 31585608 - 31585652
Alignment:
Q  190 gtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  31585608 gtcactactcacccacaaagaaca-ccctcaaaataaaactctcag 31585652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 27031687 - 27031730
Alignment:
Q  187 atcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  27031687 atcgtcactactcacccc-agagaacacccctcaaaataaaactc 27031730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 9313044 - 9313087
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaa 87  Q
    ||||||||||||||||||| || ||||||||||||||| |||||    
T  9313044 ggcgtcgtatataggcggaacacccgaaaataaacaccctaaaa 9313087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 24449774 - 24449819
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||    
T  24449774 ccatcgtcactactcacccacaaataaca-ccctcaaaataaaactc 24449819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 5459398 - 5459354
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaact 230  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||    
T  5459398 ccatcgtcactactcacccacaaagaaca-ccatcaaaataaaact 5459354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 46692663 - 46692707
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaact 230  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  46692663 ccatcgtcactactcacccacaaagaaca-ccctccaaataaaact 46692707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 4430963 - 4430880
Alignment:
Q  150 aaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccccca--aagaacacccctcaaaataaaactc 231  Q
    ||||| ||||| |||||||||||  |||| ||||||| ||||| ||||||||||| |  || |||||||||| |||| ||||||    
T  4430963 aaaacaaccaccgtaaaaacgatatccaaaaccatccgtcgtcgctactcaccccaaagaaaaacacccctccaaattaaactc 4430880  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 38546890 - 38546930
Alignment:
Q  47 gtcgtatataggcggagcatccgaaaataaacaccttaaaa 87  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  38546890 gtcgtatataggcggaacatccgaaaataaaaaccataaaa 38546930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 41920692 - 41920649
Alignment:
Q  187 atcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||    
T  41920692 atcgtcactactcacccacaaaaaaca-ccctcaaaataaaactc 41920649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 235
Target Start/End: Original strand, 10173284 - 10173473
Alignment:
Q  45 gcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcct 144  Q
    |||| ||||||||||||| || | ||||||||||||| ||||||| ||| |  || || | || |||||||||||||||||| | |||||||||||| ||    
T  10173284 gcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtct 10173383  T
Q  145 tcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    ||| ||||||||| ||||||||||||||   ||||||||  ||||||||||||||| |||||||||| || ||||||||| ||||||||||    
T  10173384 tcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactca-ccccaaagaatactcctcaaaattaaactctcag 10173473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 12343130 - 12343017
Alignment:
Q  109 catcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa 208  Q
    |||||||||||| ||||||  ||||||||||| ||||||||||||||||| |||||||||||||  |||  ||||  |||||||||||||||||||| ||    
T  12343130 catcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcca--accactcatcgtcactactcaccccccaa 12343033  T
Q  209 g-aacacccctcaaaa 223  Q
    | ||||||||||||||    
T  12343032 gaaacacccctcaaaa 12343017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 14106367 - 14106416
Alignment:
Q  186 catcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106367 catcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 14106416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 231
Target Start/End: Complemental strand, 7696333 - 7696151
Alignment:
Q  49 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 148  Q
    |||||||||||||| || || |||||||||||||||||| |||||||| || || |||| || |||||||||  |||||  |||||| | || |||||||    
T  7696333 cgtatataggcggaacacccaaaaataaacaccttaaaa-acacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcac 7696235  T
Q  149 gaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccccc---aaagaacacccctcaaaataaaactc 231  Q
    ||||||||||| |||||||| |||   ||  ||||  |||||||||||||||| |||    || ||||||||| ||||||||||||    
T  7696234 gaaaacgaccaatgtaaaaatgatattca--accactcatcgtcactactcactcccttagaaaaacacccctaaaaataaaactc 7696151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 16952173 - 16952274
Alignment:
Q  131 taaaacagacgccttcacgaaaacgacc-actgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    |||||||||||||||||||||||| | | |||| ||||| |||   || |||||  |||||||||||||||||||||||||||||||||| |||| ||||    
T  16952173 taaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 16952272  T
Q  230 tc 231  Q
    ||    
T  16952273 tc 16952274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 17022838 - 17022939
Alignment:
Q  131 taaaacagacgccttcacgaaaacgacc-actgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    |||||||||||||||||||||||| | | |||| ||||| |||   || |||||  |||||||||||||||||||||||||||||||||| |||| ||||    
T  17022838 taaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 17022937  T
Q  230 tc 231  Q
    ||    
T  17022938 tc 17022939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 17060144 - 17060245
Alignment:
Q  131 taaaacagacgccttcacgaaaacgacc-actgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    |||||||||||||||||||||||| | | |||| ||||| |||   || |||||  |||||||||||||||||||||||||||||||||| |||| ||||    
T  17060144 taaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaac 17060243  T
Q  230 tc 231  Q
    ||    
T  17060244 tc 17060245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 34230573 - 34230413
Alignment:
Q  49 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 148  Q
    |||||||||||||| || |  |||||||||| | ||||| ||||||| ||| || |||  || ||||||||| |||||| |||||| ||||| | | |||    
T  34230573 cgtatataggcggaacaccaaaaaataaacatcgtaaaa-acaccccttagaacaacatccaccaaaatacacgtcaccatctaaa-cagactcttccac 34230476  T
Q  149 gaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||||||||||||| ||||||||||  |||||| || || |||  |||||||||| ||||||||    
T  34230475 gaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaagaa 34230413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 7460912 - 7460867
Alignment:
Q  186 catcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7460912 catcgtcactactcaaccccaaagaacacccctcaaaataaaactc 7460867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 41086579 - 41086648
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactc 199  Q
    ||||||||||| |||| |||||| |||||||| ||||||||||  |||| |||| |||||||||||||||    
T  41086579 ctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactc 41086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 4975122 - 4974994
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||||||||||||||| || || ||||||||||||||| | ||| ||| ||   || |  |||| || |||| ||||   ||||  |||||||||||  |    
T  4975122 ggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttc 4975023  T
Q  144 ttcacgaaaacgaccactgtaaaaacgat 172  Q
    |||||||||||||||||||||||||||||    
T  4975022 ttcacgaaaacgaccactgtaaaaacgat 4974994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 4993030 - 4992902
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||||||||||||||| || || ||||||||||||||| | ||| ||| ||   || |  |||| || |||| ||||   ||||  |||||||||||  |    
T  4993030 ggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttc 4992931  T
Q  144 ttcacgaaaacgaccactgtaaaaacgat 172  Q
    |||||||||||||||||||||||||||||    
T  4992930 ttcacgaaaacgaccactgtaaaaacgat 4992902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 20572346 - 20572260
Alignment:
Q  146 cacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactctca 234  Q
    ||||||||||||||||| |||||||||  |||  |||| |||||| ||||||||||| | |||||||||||||| |||| |||||||||    
T  20572346 cacgaaaacgaccactg-aaaaacgatatccataacca-ccatcgccactactcacctcaaaagaacacccctctaaatgaaactctca 20572260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 7874532 - 7874482
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  7874532 accacccatcgtcactactcacccc-aaagaacatccctcaaaataaaactc 7874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 387411 - 387366
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  387411 ccatcgtcactattcacccccaaagaaca-ccctcaaaataaaactc 387366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 39338709 - 39338754
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  39338709 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactc 39338754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 4472320 - 4472277
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaa 87  Q
    |||||||||||||| |||| |||||||||||||||||| |||||    
T  4472320 ggcgtcgtatatagacggaacatccgaaaataaacaccataaaa 4472277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 14405436 - 14405389
Alignment:
Q  185 ccatcgtcactactcacccccaaa-gaacacccctcaaaataaaactc 231  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  14405436 ccattgtcactactcacccccaaaagaacatccctcaaaataaaactc 14405389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 10524337 - 10524292
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  10524337 ccatcgtcactactcacccacaaagaaca-ccctccaaataaaactc 10524292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 37770355 - 37770397
Alignment:
Q  45 gcgtcgtatataggcggagcatccgaaaataaacaccttaaaa 87  Q
    |||||||||||||||||| || ||||||||||||||| |||||    
T  37770355 gcgtcgtatataggcggaacacccgaaaataaacaccctaaaa 37770397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 5254493 - 5254452
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaa 223  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  5254493 accacccatcgtcactactcaccc--aaagaacacccctcaaaa 5254452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 41113450 - 41113494
Alignment:
Q  50 gtatataggcggagcatccgaaaataaacaccttaaaagacaccc 94  Q
    ||||||||||||| |||||||||||||| ||| ||||| ||||||    
T  41113450 gtatataggcggaacatccgaaaataaataccctaaaaaacaccc 41113494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 37078 - 36920
Alignment:
Q  50 gtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacg 149  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||   || ||||||| || ||||||||| ||||||  ||||||||||| ||||||||    
T  37078 gtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcacg 36979  T
Q  150 aaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
     |||| ||||||||||||||||   |||  |||||||| |||||||||||||||||||||||    
T  36978 -aaaccaccactgtaaaaacgacatcca--accatccaccgtcactactcacccccaaagaa 36920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 19673387 - 19673285
Alignment:
Q  133 aaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactct 232  Q
    ||||||||| ||||||||||| ||||||||||||| | ||  |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  19673387 aaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaattaaactct 19673288  T
Q  233 cag 235  Q
    |||    
T  19673287 cag 19673285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 49747901 - 49747739
Alignment:
Q  48 tcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttca 147  Q
    ||||||||| ||||| ||||| |||||||||||| ||||| ||||| |  || || |||| || |||||| |||||||||  ||||||||||| | ||||    
T  49747901 tcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttca 49747802  T
Q  148 cgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    |||||||||||| |||||||||||   ||||||||  |||| ||||||||||||||| ||||||    
T  49747801 cgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacccctaaagaa 49747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 22810932 - 22811029
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||||||||| ||||||  |||||||||||  |||||||||| |||||||||||||||||||  ||   ||||||||||||||||||||||||||||||||    
T  22810932 caaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc--taccatccatcgtcactactcacccccaaagaa 22811029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 39420743 - 39420906
Alignment:
Q  47 gtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttc 146  Q
    |||||||||||||||| || |||||||| |||||| ||||| |||| |   ||||  |||| || ||||||||| |||||| |||||||| ||| ||| |    
T  39420743 gtcgtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataacac-caccaaaatacacgtcaccatctaaaactgactcctac 39420841  T
Q  147 acgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    |||| ||| ||||| ||| |||||||  ||||||||| || |||||||||||||| |||||||||    
T  39420842 acgagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcacacccaaagaa 39420906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 38636948 - 38637096
Alignment:
Q  55 taggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaac 154  Q
    |||||||| || | ||||||||||||||||||  | |||||| || || |||| ||  |||||||||||||||  |||||||| || |||||||||||||    
T  38636948 taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaac 38637047  T
Q  155 gaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccccc 205  Q
     ||| ||||||||| |||  |||  |||| |||||||||||||||||||||    
T  38637048 aaccgctgtaaaaatgatatcca--accacccatcgtcactactcaccccc 38637096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 19815014 - 19815116
Alignment:
Q  133 aaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactct 232  Q
    ||||||||| ||||||||||| |||||| ||||||| |||  |||| ||||||| | |||||||||||||||||||||||||  ||||| || |||||||    
T  19815014 aaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagattaaactct 19815113  T
Q  233 cag 235  Q
    |||    
T  19815114 cag 19815116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 19311075 - 19311242
Alignment:
Q  49 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 148  Q
    |||| ||||||||| ||||||||| |||||||| ||||| || ||||   | |  |||| || ||||||||| ||||||  |  |||||||  |||||||    
T  19311075 cgtaaataggcggaacatccgaaattaaacaccctaaaa-actcccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcac 19311173  T
Q  149 gaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccc 217  Q
    |||||||| |||||||||||||||  |||||| | |||| ||||||| ||||||||||||||| |||||    
T  19311174 gaaaacgagcactgtaaaaacgatatccaacatcctccaccgtcactgctcacccccaaagaatacccc 19311242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 25753483 - 25753357
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag-- 209  Q
    ||||||||| |||| |  |||||||| || |||||||||||| | ||||||||||| || |  |||||| ||| ||||||||||||||||||||||||      
T  25753483 caaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcactactcacccccaaagaa 25753384  T
Q  210 -aacacccctcaaaataaaactctcag 235  Q
     ||||||||||||||| ||||| ||||    
T  25753383 aaacacccctcaaaattaaactttcag 25753357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 31050502 - 31050549
Alignment:
Q  182 catccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  31050502 catccatcgtcactactcacccccaaggaacacccctcaaaataaaac 31050549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 48098613 - 48098546
Alignment:
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||||| |||||||||||||||||||||||  ||| ||| | || ||||||||||||||||||||||||    
T  48098613 ttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 35341179 - 35341229
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  35341179 accacccatcgtcactactcacccc-agagaacacccctcaaaataaaactc 35341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 2826019 - 2825974
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  2826019 ccatcgtcactactcacccc-agagaacacccctcaaaataaaactc 2825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 8255264 - 8255219
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  8255264 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactc 8255219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 8268682 - 8268637
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  8268682 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactc 8268637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 16832829 - 16832913
Alignment:
Q  150 aaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc---caaagaacacccctcaaaataaaactc 231  Q
    ||||||||| ||||||||| |||  ||||||||| || |||||||||||||||||    ||| ||||||||||||||| ||||||    
T  16832829 aaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaacacccctcaaaattaaactc 16832913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 49528315 - 49528257
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaa---cacccctcaaaataaaactctcag 235  Q
    |||||||||| |||||||||||||||  ||||   ||||||||||||||||||||||||    
T  49528315 accatccatcttcactactcacccccttagaaaaacacccctcaaaataaaactctcag 49528257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 8705988 - 8706034
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactct 232  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  8705988 ccatcgtcactacccacccacaaagaaca-ccctcaaaataaaactct 8706034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 20464827 - 20464786
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaa 227  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  20464827 ccatcgtcactactcacccccaaataaca-ccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 30964674 - 30964629
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  30964674 ccatcatcactactcacccacaaagaaca-ccctcaaaataaaactc 30964629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 46487653 - 46487621
Alignment:
Q  48 tcgtatataggcggagcatccgaaaataaacac 80  Q
    ||||||||||||||| |||||||||||||||||    
T  46487653 tcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 3478726 - 3478541
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||| |||||||||||||| || ||||||||||||||| |||||||||  ||  ||||| |||  || ||||| ||| ||||||  || ||||||||| |    
T  3478726 ggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagacgtc 3478627  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||||||| |||| |||||||||| ||||  ||| ||||| || ||||||||||||| ||||||||||||| ||||||||| ||||||    
T  3478626 ttcacgaatacga-cactgtaaaagcgatatccatcaccaaccgtcgtcactactca-ccccaaagaacactcctcaaaattaaactc 3478541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 24324525 - 24324691
Alignment:
Q  67 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacg-aaaacgaccactgtaa 165  Q
    ||||||||||||||  ||||| ||||||   || || ||||||| ||||||||| ||||||   |||||||||| |||||||| |||||||||| |||||    
T  24324525 ccgaaaataaacactctaaaa-acacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaa 24324623  T
Q  166 aaacgatccccaacaccatccatcgtcactactcacccccaaag---aacacccctcaaaataaaactctc 233  Q
     ||||||  |||  |||| |||||||||||||||||||| ||||   ||||||||||||||||||||||||    
T  24324624 gaacgatatcca--acca-ccatcgtcactactcacccctaaagaaaaacacccctcaaaataaaactctc 24324691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 3867379 - 3867309
Alignment:
Q  159 actgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaact 230  Q
    |||||||| |||||  ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  3867379 actgtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaaca-ccctcaaaataaaact 3867309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 34390204 - 34390153
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  34390204 accacccatcgtcactactcatccccaaagaacacccctcaaaataaaactc 34390153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 6716538 - 6716628
Alignment:
Q  142 ccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag-aacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||||||||||||| |  |  |||||| |||| |||||||||||||||||| | |||||||| |||||| ||||||    
T  6716538 ccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaacgaaacaccccacaaaattaaactc 6716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 8745433 - 8745342
Alignment:
Q  142 ccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag---aacacccctcaaaataaaactc 231  Q
    ||||||||||| |||||| || |||||| ||  |||||||||||| ||||||||||||||||||||||   ||||||||||||||| ||||||    
T  8745433 ccttcacgaaa-cgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaattaaactc 8745342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 35745666 - 35745710
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  35745666 ccatcgtcactactcacccccaaagaacacctctcaaaataaaac 35745710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 1321105 - 1321011
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgcctt-cacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccccc 205  Q
    |||||||||  |||||  ||||||||||| |||| ||||||| | |||||||||||||||||  | || ||||  ||||||||||||||||||||    
T  1321105 caaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcaccccc 1321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 47325729 - 47325774
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  47325729 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactc 47325774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 6585118 - 6585073
Alignment:
Q  186 catcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||    
T  6585118 catcgtcactactcacctccaaatagcacccctcaaaataaaactc 6585073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 33719276 - 33719183
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaa-cgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc 204  Q
    |||||||| | |||||| ||||||| ||| ||||||| |||| ||||| ||||||||| |||  ||||||| |  |||||||||||||||||||    
T  33719276 caaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactcatcgtcactactcacccc 33719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 38306504 - 38306453
Alignment:
Q  179 caccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||| ||||||||||||||||||  ||||||||| |||||||||||||||||    
T  38306504 caccacccatcgtcactactcacctacaaagaaca-ccctcaaaataaaactc 38306453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 23983617 - 23983574
Alignment:
Q  48 tcgtatataggcggagcatccgaaaataaacaccttaaaagaca 91  Q
    ||||||||||||||||||||| |||||||||| | |||||||||    
T  23983617 tcgtatataggcggagcatccaaaaataaacatcataaaagaca 23983574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 31971978 - 31972023
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  31971978 ccatcgtcactactcacccacaaagaaca-ccctccaaataaaactc 31972023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 33435337 - 33435297
Alignment:
Q  194 ctactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  33435337 ctactcacccccaaagaaca-ccctcaaaagaaaactctcag 33435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 36674847 - 36674810
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacacc 81  Q
    |||||||||||||||||||  |||||||||||||||||    
T  36674847 ggcgtcgtatataggcggaatatccgaaaataaacacc 36674810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 44353380 - 44353453
Alignment:
Q  158 cactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||| ||| |  ||| |||| |||||||||||||||||||  ||||||||||||   ||||||||||||    
T  44353380 cactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactc 44353453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 26045667 - 26045859
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||| ||||||||| |||| ||||| |||||||||||| ||||| || ||||  || || |||| || |||||| || ||||||  |||||||||||  |    
T  26045667 ggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttc 26045766  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccccca--aagaacacccctcaaaataaaactctca 234  Q
    |||| ||||| |||||| ||||||||||   ||||||||  |||||||||||||||||||| |  || ||||||||||||||| |||||||||    
T  26045767 ttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctcaaaattaaactctca 26045859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 21398054 - 21398186
Alignment:
Q  75 aaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatcc 174  Q
    ||||||||||||| |||||||  || || ||||| |  |||||||| |||||| |||||||||||||||||||||||||| |||  ||||||||||||      
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  175 ccaacaccatccatcgtcactactcacccccaa 207  Q
    ||  ||||| ||||| ||| |||||||||||||    
T  21398154 cccgcaccacccatcatcagtactcacccccaa 21398186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 7161805 - 7161905
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    ||||||||||| ||||||| ||||| | ||||||||| |||||  ||| ||||| ||| ||||||||||||||||||||||||| || ||||||||||||    
T  7161805 ctaaaacagactccttcacaaaaacaagcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaaca-ccatcaaaataaaac 7161903  T
Q  230 tc 231  Q
    ||    
T  7161904 tc 7161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 14302215 - 14302337
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag-- 209  Q
    ||||||||| ||||||  ||||||||||  ||||| |||||||||||| ||||||||||||  ||||||||| |  ||||||||||||| ||||||||      
T  14302215 caaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaa 14302314  T
Q  210 -aacacccctcaaaataaaactc 231  Q
     || |||||||||||| ||||||    
T  14302315 aaatacccctcaaaattaaactc 14302337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 33258669 - 33258750
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||||||||||   |||||||||| |||||||||||||||||||  |||| ||||||||||| ||||||||||||| ||||||    
T  33258669 ctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 13953952 - 13954140
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||| |||||||||||||| || | ||||||||||||||||||| | ||||   || || || | || |||||||||||||| |  |||||||||||       
T  13953952 ggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagacttt 13954051  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag-aacacccctcaaaataaaactc 231  Q
    |||| ||| ||||| ||||||||||| ||  || ||| || |||||||||| |||| ||||||| | |||||||||| |||| ||||||    
T  13954052 ttcatgaagacgactactgtaaaaacaatatcccacatcacccatcgtcacaactctcccccaacgaaacacccctctaaattaaactc 13954140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 33109927 - 33110050
Alignment:
Q  67 ccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaa 166  Q
    |||||||||||||| ||||||   || |||||  || |||| || ||||||||| |||| |  |||||||| || |||||||||||||||||||||||||    
T  33109927 ccgaaaataaacactttaaaa---acaccctatgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaa 33110023  T
Q  167 aacgatccccaacaccatccatcgtca 193  Q
    ||||||  |||| |||| |||||||||    
T  33110024 aacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 34378341 - 34378287
Alignment:
Q  179 caccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactctca 234  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  34378341 caccgtccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctca 34378287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 7682930 - 7682750
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    ||||||||||||||||||| ||||||||||||| ||||  |||| | ||     || || |||| || |||||||||  |||||  |||||| |||| |     
T  7682930 ggcgtcgtatataggcggaacatccgaaaataagcacccaaaaa-atacttatgagaacaacacccaccaaaatacacatcaccacctaaaatagactct 7682832  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag-aacacccctcaaaat 224  Q
    ||||| ||||||||||| ||||||||  |  |   |||||||||||||||||||||| |||||| | |||||||||||||||    
T  7682831 ttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcactactcaaccccaatgaaacacccctcaaaat 7682750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 25992302 - 25992233
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactc 199  Q
    ||||||||||| ||||||||||| | |||||||||||||||||  |||| |||| |||||| ||||||||    
T  25992302 ctaaaacagaccccttcacgaaagcaaccactgtaaaaacgatatccaataccacccatcgccactactc 25992233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 26405252 - 26405347
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagac 140  Q
    |||||||||||||| |||| || ||||||||||||||||||||| |||||||  || || |||  || ||||||||| ||||||  |||||||||||    
T  26405252 ggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaa-acacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagac 26405347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 7391766 - 7391884
Alignment:
Q  109 catcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa 208  Q
    |||||||||||||||||||  ||||||  ||  ||| |||| ||| |||||||||||||||||   ||  |||   |  |||||||||||||||||||||    
T  7391766 catcaaaatacatgtcaccacctaaaattgattcctccacggaaaagaccactgtaaaaacgaaatcccgcacagcctgtcgtcactactcacccccaaa 7391865  T
Q  209 g-aacacccctcaaaataa 226  Q
    | |||||||||||||||||    
T  7391866 gaaacacccctcaaaataa 7391884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 698596 - 698549
Alignment:
Q  187 atcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  698596 atcgtcactactcacccacaaagaaca-ccctccaaataaaactctcag 698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 24071965 - 24072014
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacacc 93  Q
    |||| |||||||||||||| || ||||||||||||| | |||||||||||    
T  24071965 ggcgccgtatataggcggaacacccgaaaataaacatcataaaagacacc 24072014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 8297781 - 8297657
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcact----actcacccccaa 207  Q
    |||||||||  |||||  |||||||| || |||||| ||||| ||||| ||||||||||||  |||  |||| | |||||||||    ||||||||||||    
T  8297781 caaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttcca--accacctatcgtcactactcactcacccccaa 8297684  T
Q  208 ag---aacacccctcaaaataaaactc 231  Q
    ||   ||||||||||||||| ||||||    
T  8297683 agaaaaacacccctcaaaattaaactc 8297657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 10248269 - 10248460
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaa-caccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgc 142  Q
    ||||||||||||||||||| || || |||| ||| |||||||||| ||||||   || || |||| |  ||||||||| ||||||  |||||||| || |    
T  10248269 ggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactc 10248368  T
Q  143 cttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa--gaacacccctcaaaataaaactct 232  Q
    |||||||||||||||||||||||||||||   || ||| || ||||||||||||||||||||| ||   ||||||| ||||||| |||||||    
T  10248369 cttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccccaacgaaacacccgtcaaaattaaactct 10248460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 17656440 - 17656606
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||||||||||||| |||| || |||||||| |||||| ||||| ||||||   || || |||| || |||||| || |||||| |||||||||||| ||    
T  17656440 ggcgtcgtatatagacggaacacccgaaaattaacaccctaaaa-acacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactcc 17656538  T
Q  144 ttcacgaaaa-cgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaaga 210  Q
    |||| ||||| ||||||||| |||||||||  ||||||||   ||| |||||||||||||||||||||    
T  17656539 ttcaagaaaaacgaccactgcaaaaacgatatccaacaccgctcattgtcactactcacccccaaaga 17656606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 43312402 - 43312505
Alignment:
Q  104 acactcatcaaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccc 203  Q
    |||| |||||||||||||||||||  ||||| ||||| ||| ||| |||||||||||||||||||||||  || ||||||| |||||||||||||| |||    
T  43312402 acacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacaccatacatcgtcactactcgccc 43312501  T
Q  204 ccaa 207  Q
    ||||    
T  43312502 ccaa 43312505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 12197779 - 12197945
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||||||| |||||||||| ||   ||||||||||||| ||||||||||| |   | || |||| ||  |||||||| ||||||  ||| ||||||||||    
T  12197779 ggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcaccacctacaacagacgcc 12197877  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    |||| ||| |||||||||  |||||||||  ||| ||||| || ||||||||||||||||||||||||    
T  12197878 ttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 12442207 - 12442373
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgcc 143  Q
    |||||||| |||||||||| ||   ||||||||||||| ||||||||||| |   | || |||| ||  |||||||| ||||||  ||| ||||||||||    
T  12442207 ggcgtcgtctataggcggaacacgggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcaccacctacaacagacgcc 12442305  T
Q  144 ttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    |||| ||| |||||||||  |||||||||  ||| ||||| || ||||||||||||||||||||||||    
T  12442306 ttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaaagaa 12442373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 9519737 - 9519688
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9519737 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctcag 9519688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 38577630 - 38577679
Alignment:
Q  182 catccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  38577630 catccatcgtcactactcatccccaaagaacactccacaaaataaaactc 38577679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 34388852 - 34388898
Alignment:
Q  187 atcgtcactactcacccccaaagaacacccctcaaaataaaactctca 234  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  34388852 atcgtcactactcacccacaaagaaca-ccctcaaaataaaactctca 34388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 35816085 - 35816128
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaa 223  Q
    |||| ||||| |||||||||||||||||||||||||||||||||    
T  35816085 accacccatcatcactactcacccccaaagaacacccctcaaaa 35816128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 12898120 - 12898165
Alignment:
Q  186 catcgtcactactcacccccaaagaacacccctcaaaataaaactct 232  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  12898120 catcgtcactactcacccacaaagaaca-ccctcaaaataaaactct 12898165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 31207206 - 31207251
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31207206 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactc 31207251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 8862325 - 8862494
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaa-taaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgc 142  Q
    |||| ||||||||| |||| |||||||||| |||||||| ||||| |||||||  || || |||| ||  |||||||| ||||||  ||||||| ||| |    
T  8862325 ggcgccgtatatagacggaacatccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaaactgactc 8862424  T
Q  143 cttcacgaaaacgaccactgtaaaaacgat-ccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
     | ||||| ||| |||| ||||||||| ||  || |||||||  | ||||||||||| || |||||||||    
T  8862425 ttacacgagaacaaccattgtaaaaacaatatccaaacaccacacgtcgtcactactgactcccaaagaa 8862494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 24995238 - 24995283
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  24995238 ccatcgtcactactcacgcacaaagaaca-ccctcaaaataaaactc 24995283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 32066139 - 32066188
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||||||||||    
T  32066139 ccatcgtcactactcactcacaaagaaca-ccctccaaataaaactctcag 32066188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 15821224 - 15821269
Alignment:
Q  186 catcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||| |||||||||| || ||||||||| ||||||||||||||||    
T  15821224 catcgccactactcactccaaaagaacactcctcaaaataaaactc 15821269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 16457292 - 16457380
Alignment:
Q  158 cactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactctc-agctgagccacat 246  Q
    ||||||||| ||| |  ||| |||| ||||||||||||||||||||  ||||| || |||| |||||||||||| | |||||||||||||    
T  16457292 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccataaagacca-ccctgaaaataaaactcccaagctgagccacat 16457380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 20138691 - 20138618
Alignment:
Q  158 cactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||| ||| |  ||| |||| |||||||||||||||||||  ||||||||||||   ||||||||||||    
T  20138691 cactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactc 20138618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 22325867 - 22325957
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc 204  Q
    ||||||| | |||||| | |||||||||| |||| || |||||||||| ||||||||||||  ||   ||||||||||||| | |||||||||    
T  22325867 caaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaacgatatcc--gaccatccatcgtcgccactcacccc 22325957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 37986696 - 37986747
Alignment:
Q  179 caccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||| ||||||||| ||||||||| ||||||||| ||||| |||||||||||    
T  37986696 caccacccatcgtcattactcacccacaaagaaca-ccctccaaataaaactc 37986747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 50518796 - 50518956
Alignment:
Q  47 gtcgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttc 146  Q
    |||||||||||||||| || ||||||||||||||| ||||| ||||||   || ||||||| || |||||||||  ||||| |||||||||||| |||||    
T  50518796 gtcgtatataggcggaacacccgaaaataaacaccctaaaa-acacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttc 50518894  T
Q  147 acgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaa 211  Q
    ||| | || |||||||||||||||||  | |  || |||||||||||||||||||| ||||||||    
T  50518895 acg-ataccaccactgtaaaaacgatatcta--acgatccatcgtcactactcacctccaaagaa 50518956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 37123691 - 37123565
Alignment:
Q  112 caaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa--- 208  Q
    |||||||||  ||||| | ||||| ||||  ||||||||||||||||||||||||||||||  ||||||||| |  | ||||||||||||| |||||       
T  37123691 caaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaaagat 37123592  T
Q  209 gaacacccctcaaaataaaactctcag 235  Q
    ||||||||||| |||| ||||||||||    
T  37123591 gaacacccctccaaattaaactctcag 37123565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 12086614 - 12086491
Alignment:
Q  49 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 148  Q
    |||||| ||||||| ||| |||||||||||| ||||||||| ||||||||  ||||||| || ||||||| |  |||||  |||||||||| |  ||||     
T  12086614 cgtataaaggcggaacattcgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcaccacctaaaacagatgtattcaa 12086515  T
Q  149 gaaaacgaccactgtaaaaacgat 172  Q
    |||||||| |||||||||||||||    
T  12086514 gaaaacgatcactgtaaaaacgat 12086491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 23328189 - 23328240
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  23328189 accacccatcgtcactactcacccccaaagaacaccactcaaaataaaactc 23328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 14194300 - 14194152
Alignment:
Q  51 tatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacga 150  Q
    |||||||||||| |||||||||||||||| | ||||| |||| |   || ||||||| || ||||||||| ||||||  ||||||||||| || ||||||    
T  14194300 tatataggcggaacatccgaaaataaacatcctaaaa-acactcatgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacga 14194202  T
Q  151 aaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc 204  Q
    || || |||||| || ||||||  |||  |||||||||||||||||||||||||    
T  14194201 aatcg-ccactg-aataacgatatcca--accatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 7105145 - 7105032
Alignment:
Q  118 acatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccc 217  Q
    ||||||||||  |||||||||||  ||||| |||||| | |||| |||||||  |  ||| ||||| |||||||||||||||||||| ||  ||||||||    
T  7105145 acatgtcaccacctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaacacccc 7105046  T
Q  218 tcaaaataaaactc 231  Q
    | ||||||||||||    
T  7105045 ttaaaataaaactc 7105032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 28937502 - 28937579
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaa 207  Q
    ||||||||||| |||||||||||  ||||||||||||||||||  |||| |||| |||||| ||||||||||| ||||    
T  28937502 ctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaa 28937579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 4171035 - 4170929
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccc---caaagaacacccctcaaaataa 226  Q
    |||||| |||| |||||||||||| ||||| |||| ||| |||  |||||  |||||||||||||||||||||||   | || ||||||||||||| |||    
T  4171035 ctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaac--catccatcgtcactactcacccccttctaaaaacacccctcaaagtaa 4170938  T
Q  227 aactctcag 235  Q
    |||||||||    
T  4170937 aactctcag 4170929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 40023411 - 40023462
Alignment:
Q  180 accatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  40023411 accatccatcgtcactactcatcccaaaagaacgcccctcaaaataaaactc 40023462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 19176747 - 19176698
Alignment:
Q  179 caccatccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  19176747 caccatccatcgtcactactcacccctaaagaaca-ccctcaaaataaaac 19176698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 14879708 - 14879625
Alignment:
Q  151 aaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag---aacacccctcaaaataaaactc 231  Q
    |||||||||||| |||||||||  |||||||||  ||||||||||| ||||||| ||||   ||||||||||||||| ||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaattaaactc 14879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 33143740 - 33143813
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccc 203  Q
    |||||||| || ||||||||||||| ||||||| | |||||||  ||||| |||||| ||||||||||||||||    
T  33143740 ctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 45399036 - 45398987
Alignment:
Q  182 catccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  45399036 catccatcgtcactactcacccccaacgaacaccccacaaaatagaactc 45398987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 47235962 - 47235890
Alignment:
Q  158 cactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||| ||| |  ||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  47235962 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactc 47235890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 48893062 - 48893214
Alignment:
Q  49 cgtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcac 148  Q
    |||||||| | ||| ||||||||||||||||| |||||| |||||||  |  || |||| || ||||||||||||||||  |||||| |||| |||| ||    
T  48893062 cgtatataagaggaacatccgaaaataaacactttaaaa-acacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttac 48893160  T
Q  149 gaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacc 202  Q
     |||||||  || |||||||| ||  ||||   ||||| |||||||||||||||    
T  48893161 aaaaacgattacggtaaaaacaatatccaatgtcatccgtcgtcactactcacc 48893214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 43012674 - 43012567
Alignment:
Q  123 tcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaagaacacccctcaaa 222  Q
    ||||| |||||||||||| ||||||| ||||| | || |||||| ||| |  ||| | || ||||||| ||||||||||| |||||||||| ||||||||    
T  43012674 tcaccatctaaaacagactccttcacaaaaacaagcattgtaaacacggtatccacccccgtccatcgccactactcacctccaaagaaca-ccctcaaa 43012576  T
Q  223 ataaaactc 231  Q
     ||||||||    
T  43012575 ttaaaactc 43012567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 14755051 - 14755129
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag 209  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||  | || ||||||||||| | |||| |||||||||||    
T  14755051 ctaaaacagaccccttcacgaaagcgaccattgtaaaaacgatatctaataccatccatcgccgctac-cacccccaaag 14755129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 17551189 - 17551140
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactctcag 235  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  17551189 ccatcgtcactactcaccgacaaagaaca-ccctcaaaataaaactctcag 17551140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 25648054 - 25647901
Alignment:
Q  50 gtatataggcggagcatccgaaaataaacaccttaaaagacaccccctagcaccacactcatcaaaatacatgtcaccgtctaaaacagacgccttcacg 149  Q
    |||||||| |||| || ||||||||||||||| ||||| |||| |   || ||||||| || ||||  ||||||||||   ||||||| || || |||||    
T  25648054 gtatatagacggaacacccgaaaataaacaccctaaaa-acacacatgaggaccacacccaccaaataacatgtcaccacataaaacatactccatcacg 25647956  T
Q  150 aaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa 208  Q
    ||| | ||||||| |||||||||  |||||  |||||||| ||||||||||||||||||    
T  25647955 aaacc-accactg-aaaaacgatatccaac--catccatcatcactactcacccccaaa 25647901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 20612019 - 20611974
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  20612019 ccatcgtcactactcacccacaaagaaca-ccctcagaataaaactc 20611974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 32010163 - 32010117
Alignment:
Q  45 gcgtcgtatataggcggagcatccgaaaataaacaccttaaaagaca 91  Q
    ||||||||||||||||||  | | |||||||||||||||||||||||    
T  32010163 gcgtcgtatataggcggaatacctgaaaataaacaccttaaaagaca 32010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 32010053 - 32010012
Alignment:
Q  130 ctaaaacagacgccttcacgaaaacgaccactgtaaaaacga 171  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||    
T  32010053 ctaaaacagactccttcacgaaaacgacctctgaaaaaacga 32010012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 39021091 - 39021172
Alignment:
Q  155 gaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag-aacacccctcaaaataaaactctcag 235  Q
    ||||||||||||||||||  || || ||   |||||||||||||||| ||||||| ||||| | ||||||| ||||||||||    
T  39021091 gaccactgtaaaaacgatatcccacgcctctcatcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcag 39021172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 46358092 - 46358137
Alignment:
Q  50 gtatataggcggagcatccgaaaataaacaccttaaaagacacccc 95  Q
    ||||||||||| | || | |||||||||||||||||||||||||||    
T  46358092 gtatataggcgaaacacctgaaaataaacaccttaaaagacacccc 46358137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 58418 - 58312
Alignment:
Q  132 aaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaag---aacacccctcaaaataaaa 228  Q
    ||||||||| |||||||||||||||||| |||||||  |||  ||||||| | || |||||||||||||| |||||||   ||||| ||||||||| |||    
T  58418 aaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactcctcaaaattaaa 58319  T
Q  229 ctctcag 235  Q
    |||||||    
T  58318 ctctcag 58312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 3880405 - 3880490
Alignment:
Q  150 aaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcaccccc----aaagaacacccctcaaaataaaactc 231  Q
    |||||||||||| ||||||||||  |||||||||||  ||||||||||||||||||    ||| ||||||||||||||| ||||||    
T  3880405 aaaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactc 3880490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 20701594 - 20701668
Alignment:
Q  134 aacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa 208  Q
    ||||||| | ||||||||| | |||||||||||||||||  |||| || | ||||||||||||||||||||||||    
T  20701594 aacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccccaaa 20701668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 17278166 - 17278215
Alignment:
Q  44 ggcgtcgtatataggcggagcatccgaaaataaacaccttaaaagacacc 93  Q
    ||||||||||||||||||| || ||||||||||||| | |||||||||||    
T  17278166 ggcgtcgtatataggcggaacacccgaaaataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 14663314 - 14663269
Alignment:
Q  185 ccatcgtcactactcacccccaaagaacacccctcaaaataaaactc 231  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||    
T  14663314 ccatcgtcactactcacccgcaaagaaca-tcctcaaaataaaactc 14663269  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 15120432 - 15120486
Alignment:
Q  175 ccaacaccatccatcgtcactactcacccccaaagaacacccctcaaaataaaac 229  Q
    ||||||||||||||||||||||||||||| |||  |||| |||| ||||| ||||    
T  15120432 ccaacaccatccatcgtcactactcaccctcaagaaacatccctaaaaattaaac 15120486  T

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Target: scaffold1384 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 1428 - 1523
Alignment:
Q  113 aaaatacatgtcaccgtctaaaacagacgccttcacgaaaacgaccactgtaaaaacgatccccaacaccatccatcgtcactactcacccccaaa 208  Q
    |||||||| ||||||  ||||||| ||| ||| ||||| ||| |||||||||||||||||  |||||||||  | ||||||||||| |||||||||    
T  1428 aaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtcactactgacccccaaa 1523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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