View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_57 (Length: 256)
Name: NF16912_high_57
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_57 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 14075256 - 14075019
Alignment:
| Q |
19 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctccttatatcaaattcttctgaattctgaacagatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14075256 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctccttatatcaaattcttctgaattctgaacagatt |
14075157 |
T |
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| Q |
119 |
ccgtagcagctttaacagcttgatgattcataccaagattagaacaaaatcttcccataaagtccccaatatgaattattcccatttcaatagattgacc |
218 |
Q |
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| T |
14075156 |
ccgtagcagctttaacagcttgatgattcataccaagattagaacaaaatcgtcccataaagtccccaatatgaattattcccatttcaatagattgacc |
14075057 |
T |
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| Q |
219 |
accattctccaaacccagttgtttcactatgtattctt |
256 |
Q |
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| T |
14075056 |
accattctctaaacccagttgtttcactatgtattctt |
14075019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 14150667 - 14150433
Alignment:
| Q |
19 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctccttatatcaaattcttctgaattctgaacagatt |
118 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14150667 |
tttttatcatctgaaagctgagttatgatgtatataactgttgcagcaattgatatgggacttctccttatatcaaattcttctgaattctgaacagatt |
14150568 |
T |
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| Q |
119 |
ccgtagcagctttaacagcttgatgattcataccaagattagaacaaaatcttcccataaagtccccaatatgaattattcccatttcaatagattgacc |
218 |
Q |
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| T |
14150567 |
cattagcagctttaacagcttgatgattcataccaagattcgaacaaaatcgtcccataaagtccccaatatgagttgttcccatttctacagattgacc |
14150468 |
T |
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| Q |
219 |
accattctccaaacccagttgtttcactatgtatt |
253 |
Q |
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| T |
14150467 |
accattctccaaagctagttgtttcatgatgtatt |
14150433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 13610199 - 13609962
Alignment:
| Q |
19 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctccttatatcaaattcttctgaattctgaacagatt |
118 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||| |
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| T |
13610199 |
tttttatcatcagaaagctgagtaatgatgtatataactgctgcagcaattgttatgggacttctccttatatcaaattcctctgatttcttaacagatt |
13610100 |
T |
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| Q |
119 |
ccgtagcagctttaacagcttgatgattcataccaagattagaacaaaatcttcccataaagtccccaatatgaattattcccatttcaatagattgacc |
218 |
Q |
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| T |
13610099 |
cctgagcagctttaacagcttgatgattcataccaagattagaacaaaatcgtctcataaagtccccagcatgaattgttcccatttctacagattgacc |
13610000 |
T |
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| Q |
219 |
accattctccaaacccagttgtttcactatgtattctt |
256 |
Q |
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| T |
13609999 |
accattctccaaaccaagttgtttcactatgtattctt |
13609962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 36012213 - 36012298
Alignment:
| Q |
84 |
ccttatatcaaattcttctgaattctgaacagattccgtagcagctttaacagcttgatgattcataccaagattagaacaaaatc |
169 |
Q |
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| T |
36012213 |
ccttatatcaaattcttcggatttctgaacagattcctgagcagctttaacagcttgatgattcataccaagattagaacaaaatc |
36012298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 36012426 - 36012509
Alignment:
| Q |
173 |
ccataaagtccccaatatgaattattcccatttcaatagattgaccaccattctccaaacccagttgtttcactatgtattctt |
256 |
Q |
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| T |
36012426 |
ccataaagtccccagcatgaattgttcccatttcaacagattgaccgccattctccaaacccagttgtttcactatgtattctt |
36012509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 36011296 - 36011363
Alignment:
| Q |
19 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctcct |
86 |
Q |
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| T |
36011296 |
tttttatcatctgagagctgagtaatgatgtatataactgctgcagcaattgatatgggacttctcct |
36011363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 7591761 - 7591666
Alignment:
| Q |
19 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctccttatatcaaattcttctgaattctgaaca |
114 |
Q |
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||||||||||| ||||| ||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
7591761 |
tttttatcatctgaaagctgaataatgatgtatataactgctgcagcatttgatatgggacttctccttatatcaaattcttctgatttctcaaca |
7591666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 22089163 - 22089230
Alignment:
| Q |
19 |
tttttatcatccgaaagatgagttatgatgtatataactgttgcagcaattgatatgggacttctcct |
86 |
Q |
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| T |
22089163 |
tttttatcaccagaaagctgagatatgatgtatataactgcagcagcaattgttataggactcctcct |
22089230 |
T |
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