View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_59 (Length: 250)
Name: NF16912_high_59
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_59 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3964 - 3732
Alignment:
| Q |
1 |
ctgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacattt |
100 |
Q |
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| T |
3964 |
ctgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacactt |
3865 |
T |
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| Q |
101 |
gcatatcctaccacgaaataagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatcc |
200 |
Q |
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| T |
3864 |
gcatatcctaccacgaaataagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatcc |
3769 |
T |
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| Q |
201 |
gctagtgccacataacagcactgtcacagattgcttc |
237 |
Q |
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| T |
3768 |
gctagtgccacataacagcactgtcacagattccttc |
3732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 21447572 - 21447804
Alignment:
| Q |
1 |
ctgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21447572 |
ctgtcgtgattcccaatctgctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacactt |
21447671 |
T |
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| Q |
101 |
gcatatcctaccacgaaataagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatcc |
200 |
Q |
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| T |
21447672 |
gcatatcctaccacgaaataagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatcc |
21447767 |
T |
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| Q |
201 |
gctagtgccacataacagcactgtcacagattgcttc |
237 |
Q |
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| T |
21447768 |
gctagtgccacataacagcactgtcacagattccttc |
21447804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 40684848 - 40684774
Alignment:
| Q |
163 |
tataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttc |
237 |
Q |
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|||||||| | ||||||||| || ||||| ||||| || ||||| ||||| || |||||||||||||||| |||| |
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| T |
40684848 |
tataccagcaatgcagacaatgtggatttcccacaaccactagttccacacaaaagcactgtcacagattccttc |
40684774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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