View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_6 (Length: 587)
Name: NF16912_high_6
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 405 - 574
Target Start/End: Original strand, 32266026 - 32266195
Alignment:
| Q |
405 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
504 |
Q |
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| T |
32266026 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
32266125 |
T |
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| Q |
505 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacatttgctaccattctcatagatttctt |
574 |
Q |
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| T |
32266126 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacttttgctaccattctcatagatttctt |
32266195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 32265677 - 32265826
Alignment:
| Q |
47 |
attcttaaaattcaagatattcatcaatgtacctcaatagaagaagatgcttcaaaaaatgatgtaaaagtaaaaaccaagataacccattaagccattt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265677 |
attcttaaaattcaagatattcatcaatgtacctcaatagaagaagatgcttcaaaaaatgatgtaaaagtaaaaaccaagataacccattaagccattt |
32265776 |
T |
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| Q |
147 |
cccttattcatcaacaggagcaggtagattgagatcaatcaaacaaggaa |
196 |
Q |
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| T |
32265777 |
cccttattcatcaacaggagcaggtagattgagatcaatcaaacaaggaa |
32265826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 32265846 - 32265956
Alignment:
| Q |
225 |
ttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaatt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
32265846 |
ttgtttgatcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttgtagcaaatt |
32265945 |
T |
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| Q |
325 |
ggacattcata |
335 |
Q |
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||||||||||| |
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| T |
32265946 |
ggacattcata |
32265956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 19300380 - 19300482
Alignment:
| Q |
232 |
atcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacatt |
331 |
Q |
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||||||| |||||| || ||| |||||||| |||||| |||||||| || || ||||| |||||||||||| ||||||| || | ||||||||||||| |
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| T |
19300380 |
atcacaagagtgttatcatcatttcctccaataaaatgggatcttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttgcaaattggacatt |
19300479 |
T |
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| Q |
332 |
cat |
334 |
Q |
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||| |
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| T |
19300480 |
cat |
19300482 |
T |
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