View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_66 (Length: 238)
Name: NF16912_high_66
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_66 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 31820123 - 31819903
Alignment:
| Q |
17 |
caataaacatttgataatgcacatttgtaattgaccgagaacaatgcatatcagaattagacaggggcagactctagcatttccccacttctttatatgc |
116 |
Q |
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| T |
31820123 |
caataaacatttgataatgcacatttgtaattgaccgagaacaatgcatatcagaattagacaggggcagactctagcatttccccacttctttatatgc |
31820024 |
T |
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| Q |
117 |
taattagtattatcatagtagttaaagagaattggcccattcctgaaatgcttaataaaggggtaacatttttactaaatttgaatattctaaatgtctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31820023 |
taattagtattatcatagtagttaaagagaattggcccattcctgaaatgcctaataaa-gggtaacatttttactaaatttgaatattctaaatgtctt |
31819925 |
T |
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| Q |
217 |
gagagctgattcaatatgctcc |
238 |
Q |
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|||||||||||||| ||||||| |
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| T |
31819924 |
gagagctgattcaacatgctcc |
31819903 |
T |
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