View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_7 (Length: 578)
Name: NF16912_high_7
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 323 - 555
Target Start/End: Complemental strand, 12682625 - 12682393
Alignment:
| Q |
323 |
atagcttccaagaatctcttatgtaactcctcttgtttctcaacaacctccttcattagtctctcaaagaaatccttccatttcctcttcctcttccgcc |
422 |
Q |
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| T |
12682625 |
atagcttccaagaatctcttatgtaactcctcttgtttctcaacaacctccttcattagtctctcaaagaaatccttccatttcctcttcctcttccgcc |
12682526 |
T |
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| Q |
423 |
gattcgatcccccttccattgtcgtcgtttcctcagaagaagttgaagacgaacttgaattcgagaagaaatctgttgaaatgttggggaatgatgatgg |
522 |
Q |
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| T |
12682525 |
gattcgatcccccttccattgtcgtcgtttcctcagaagaagttgaagacgaacttgaattcgagaagaaatctgttgaaatgttggggaatgatgatgg |
12682426 |
T |
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| Q |
523 |
tgggggtgttgtagtaatttgaggaatagggtt |
555 |
Q |
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| T |
12682425 |
tgggggtgttgtagtaatttgaggaatagggtt |
12682393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 12682937 - 12682682
Alignment:
| Q |
17 |
gctgctgctgctggcaacggtactggtgttggtgttggtgt------cggtttcggtgttggggttggtgtagtttcttgcggcgcttgttgctgctgag |
110 |
Q |
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| T |
12682937 |
gctgctgctgctggcaacggtactggtgttggtgttggtgttggtgtcggtttcggtgttggggttggtatagtttcttgcggcgcttgttgctgctgag |
12682838 |
T |
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| Q |
111 |
gaacaatggtactgttgttcaatacaggaggaacaagaatttgttgttcttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttggt |
210 |
Q |
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| T |
12682837 |
gaacaatggtgctgttgttcaatacaggaggaacaagattttgttgttcttgttgttcagcaatcttctgcaaaaaagccataacagcagcatctttagt |
12682738 |
T |
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| Q |
211 |
agcagcaagagatctctcttgagcaagaatttccctttctctattaatcctttgca |
266 |
Q |
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| T |
12682737 |
agcagcaagagatctctcttgagcaagaatttccctttctctattaatcctttgca |
12682682 |
T |
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