View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_high_71 (Length: 231)
Name: NF16912_high_71
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_71 |
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| [»] scaffold0971 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 28610356 - 28610484
Alignment:
| Q |
87 |
atatcatcatgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatcca |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28610356 |
atatcatcatgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatcca |
28610455 |
T |
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| Q |
187 |
agacaaagaaggaattccacctgaccaac |
215 |
Q |
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| T |
28610456 |
agacaaagaaggaattccacctgaccaac |
28610484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 28610622 - 28610704
Alignment:
| Q |
125 |
aaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaagaaggaattccacc |
207 |
Q |
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| T |
28610622 |
aaaaccataaccctggaagttgaatcttctgacacaatcgacaacgtgaaggcgaagattcaagacaaggaaggcattccacc |
28610704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 14677042 - 14677162
Alignment:
| Q |
95 |
atgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaag |
194 |
Q |
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| T |
14677042 |
atgcagatcttcgtgaaaaccctaaccgggaagacaataaccctcgaagttgaatcttcagacaccatcgacaatgtgaaagccaagatccaagacaaag |
14677141 |
T |
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| Q |
195 |
aaggaattccacctgaccaac |
215 |
Q |
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| T |
14677142 |
aaggaatcccaccggaccaac |
14677162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 36459859 - 36459977
Alignment:
| Q |
95 |
atgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaag |
194 |
Q |
| |
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| T |
36459859 |
atgcagatcttcgtgaaaaccctaacagggaagacgataaccctcgaggttgagtcttccgacacaatcgacaatgtcaaagccaagatccaggataagg |
36459958 |
T |
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| Q |
195 |
aaggaattccacctgacca |
213 |
Q |
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| T |
36459959 |
aaggaattccacctgacca |
36459977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 33774971 - 33775081
Alignment:
| Q |
94 |
catgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaa |
193 |
Q |
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||||||||| ||||| || ||| | |||||||| || | ||||| ||||| ||| |||||||| |||||||||||||||||||| ||||| || || |
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| T |
33774971 |
catgcagatcttcgttaagaccctcaccggcaagaccaccacccttgaggtcgaaagctccgacaccatcgacaacgtcaaagccaagatccaggataag |
33775070 |
T |
|
| Q |
194 |
gaaggaattcc |
204 |
Q |
| |
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||||||||||| |
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| T |
33775071 |
gaaggaattcc |
33775081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 31288216 - 31288115
Alignment:
| Q |
94 |
catgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaa |
193 |
Q |
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| T |
31288216 |
catgcagatatttgtgaagacattgaccggaaaaacaatcacccttgaggttgaatcatctgatacaattgataatgtcaaggccaagatccaagacaaa |
31288117 |
T |
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| Q |
194 |
ga |
195 |
Q |
| |
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|| |
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|
| T |
31288116 |
ga |
31288115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 31260708 - 31260593
Alignment:
| Q |
95 |
atgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaag |
194 |
Q |
| |
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||||| || ||||||||||| ||||| || ||||| || ||||| ||||| |||||||| || ||||| || || ||||| ||||| || |||||||||| |
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| T |
31260708 |
atgcaaatcttcgtgaaaacattgactggtaaaaccatcacccttgaggtggaatcatcagatacaattgataatgtcaaggccaagattcaagacaaag |
31260609 |
T |
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| Q |
195 |
aaggaattccacctga |
210 |
Q |
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| T |
31260608 |
agggaatccctcctga |
31260593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 42075576 - 42075679
Alignment:
| Q |
95 |
atgcagattttcgtgaaaaccttgaccggcaaaacaataaccctagaggtagaatcatccgacacaatcgacaacgtcaaagccaaaatccaagacaaag |
194 |
Q |
| |
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|||||||| |||||||||||| | |||||||| || || ||||| ||||| || ||| |||||| ||||| ||||||||||| || || || ||||||| |
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| T |
42075576 |
atgcagatcttcgtgaaaaccctaaccggcaagactatcacccttgaggtggagtcaagcgacactatcgataacgtcaaagctaagattcaggacaaag |
42075675 |
T |
|
| Q |
195 |
aagg |
198 |
Q |
| |
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|||| |
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| T |
42075676 |
aagg |
42075679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 3 - 47
Alignment:
| Q |
154 |
cgacacaatcgacaacgtcaaagccaaaatccaagacaaagaagg |
198 |
Q |
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| T |
3 |
cgacaccatcgacaatgtcaaagccaaaattcaagacaaggaagg |
47 |
T |
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