View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16912_high_83 (Length: 203)
Name: NF16912_high_83
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_high_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 20768169 - 20768331
Alignment:
| Q |
24 |
cactactcttgtttgtacgtgacaagttgtcaacaaaaacaagacgtgttttgattgttgtcacacagacagtttctgcaaatctttgacctatacaaat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20768169 |
cactactcttgtttgtacgtgacaagttgtcaacaaaaacaagacgtgttttgattgttgtcacacagacagtttctgcaaatctttgacctatacaaat |
20768268 |
T |
|
| Q |
124 |
attttaatattttcctatgttacttgtttcccactagtacataataaaatgtgtgtgtctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20768269 |
attttaatattttcctatgttacttgtttcccactagtacataataaaatgtgtgtgtctgtg |
20768331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University