View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_low_1 (Length: 796)

Name: NF16912_low_1
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_low_1
NF16912_low_1
[»] chr1 (1 HSPs)
chr1 (10-727)||(50529767-50530490)


Alignment Details
Target: chr1 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 10 - 727
Target Start/End: Complemental strand, 50530490 - 50529767
Alignment:
Q  10 acatcatcacacacagaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgcta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530490 acatcatcacacacagaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgcta 50530391  T
Q  110 aaactccctctcgctttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgcgttcgagctaggtccggtaacagcatgcgcaaaac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||     
T  50530390 aaactccctctcgctttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgtgttcgagctaggtccggcaacagcatgcgcaaaag 50530291  T
Q  210 cctccgttggtttgacttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggccct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530290 cctccgttggtttgacttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggccct 50530191  T
Q  310 tccgttgttctatcttacgccattgccggtttctgtgctctcctctctgccttttgttacactgagtttgcggttgatatgccggtcgccggtggcgctt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530190 tccgttgttctatcttacgccattgccggtttctgtgctctcctctctgccttttgttacactgagtttgcggttgatatgccggtcgccggtggcgctt 50530091  T
Q  410 ttagctacctccgtgtcacattcggtgaatttgcggcctttataaccggtgcaaatctcatcatggattacgtgatgtcaaatgctgcagttgccagagg 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50530090 ttagctacctccgtgtcacattcggtgaatttgcggcctttataaccggtgcaaatctcatcatggattacgtgatgtcaaatgctgcagttgctagagg 50529991  T
Q  510 tttcaccaagtacgtcggcaccacagtcggtgtctcttctgctaaatggaggatcaccgttccttcttttccggaagggtttaaccaaatcgacttggtt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50529990 tttcaccaagtacgtcggcaccacagtcggtgtctcttctgctaaatggaggatcaccgttccttcttttccggaagggtttaaccaaatcgacttggtt 50529891  T
Q  610 gctgtcgttgttgttttactcatcacagtggttatctgctacaggtttgtaactgatccttcttgatcaacat------ccaccattaagcacagtcaca 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||    
T  50529890 gctgtcgttgttgttttactcatcacagtggttatctgctacaggtttgtaactgatccttcttgatcaacatccacatccaccactaagcacagtcaca 50529791  T
Q  704 gacaacaaacacgatatgatacac 727  Q
    ||||||||||||||||||||||||    
T  50529790 gacaacaaacacgatatgatacac 50529767  T

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