View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_11 (Length: 539)
Name: NF16912_low_11
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 4467997 - 4467475
Alignment:
| Q |
1 |
cactttgttgcatttacaagcatcatcaagatattaataggaatgatcattgggttgattctttgaaatatgatgtgattagaatgctgattaggggaac |
100 |
Q |
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| T |
4467997 |
cactttgttgcatttacaagcatcatcaagatattaataggaatgatcattgggttgattctttgaaatatgatgtgattagaatgctgattaggggaac |
4467898 |
T |
|
| Q |
101 |
tgattactctcattctttatgtttgcatgtgtgtgatggctcttcagagtttcatgtttactcaaagaaaagttggttgactttctgtcctgaacaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467897 |
tgattactctcattctttatgtttgcatgtgtgtgatggctcttcagagtttcatgtttactcaaagaaaagttggttgactttctgtcctgaacaaggt |
4467798 |
T |
|
| Q |
201 |
gcacttgtaatcactgccggagatcaaatccaggttattttacatttttgctttctctttctacataatagtgatagtatttcaacaaaacaaaaaactc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467797 |
gcacttgtaatcactgcgggagatcaaatccaggttattttacatttttgctttctctttctacataatagtgatagtatttcaacaaaacaaaaaactc |
4467698 |
T |
|
| Q |
301 |
cacctacacttttgttttaaaaatgaacaattatatatagatcttaaaaataaacaaaactaacctcttaatgttagtgtgtcaatattttgactatacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467697 |
cacctacacttttgttttaaaaatgaacaattatatatagatcttaaaaataaacaaaactaacctcttaatgttagtgtgtcaatattttgactatacc |
4467598 |
T |
|
| Q |
401 |
ttcaatctttcatgacagcaaaattgctgatagatattatatctgcctatctcacttaacgagtttgatattgcttggctataggtattgagtggagggc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467597 |
ttcaatctttcatgacagcaaaattgctgatagatattatatctgcctatctcacttaacgagtttgatattgcttggctataggtattgagtggagggc |
4467498 |
T |
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| Q |
501 |
attacaaggatgtaattggaaag |
523 |
Q |
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||||||||||||||||||||||| |
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| T |
4467497 |
attacaaggatgtaattggaaag |
4467475 |
T |
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