View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16912_low_15 (Length: 490)

Name: NF16912_low_15
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16912_low_15
NF16912_low_15
[»] chr1 (7 HSPs)
chr1 (11-472)||(34978003-34978460)
chr1 (98-235)||(34992809-34992943)
chr1 (259-434)||(34991949-34992120)
chr1 (98-203)||(34986023-34986124)
chr1 (246-305)||(34986610-34986669)
chr1 (379-458)||(34985219-34985300)
chr1 (251-321)||(34985295-34985365)


Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 472
Target Start/End: Complemental strand, 34978460 - 34978003
Alignment:
Q  11 gatgaagtaaaagagaatgtttctggggcgcatttgctcggataagctatgatgaaggtggtagaacaggctgatgttgtttcctcctgcggctgatatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34978460 gatgaagtaaaagagaatgtttctggggcgcatttgctcggataagctatgatgaaggtggtagaacaggctgatgttgtttcctcctgcggctgatatg 34978361  T
Q  111 gtgttctgagcgcatatataattccattgcaaactgaaggcaatttaagtgctctgattctgaagagccaaattgtaggcattccagttcctaactctaa 210  Q
    ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  34978360 gtgttctgagcgcata----attccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccagttcccaactctaa 34978265  T
Q  211 tgtgcgctgaactccaccgtcaccaggatgatttaaaacctgtaaaagtgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34978264 tgtgcgctgaactccaccgtcaccaggatgatttaaaacctgtaaaagtgtggtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaa 34978165  T
Q  311 ccaggtagatacactactagtacaataaattataaattacataaaacttcacnnnnnnnattttaaaatagacagaagggagatcaacagagaattaagg 410  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||    
T  34978164 ccaggtagatacactactaatacaataaattataaattatataaaacttcactttttttattttaaaatagatagaagggagatcaacagagaattaagg 34978065  T
Q  411 acttgcaatccttgaaaggaaaactcacaacatgttgcaaacaatacatcacaaataactca 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34978064 acttgcaatccttgaaaggaaaactcacaacatgttgcaaacaatacatcacaaataactca 34978003  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 34992943 - 34992809
Alignment:
Q  98 tgcggctgatatggtgttctgagcgcatatataattccattgcaaactgaaggcaatttaagtgctctgattctgaagagccaaattgtaggcattccag 197  Q
    |||||||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34992943 tgcggctgatatggtgttctgagcacata----attccattgcaaactgaaggcaatttaagtgctctgattctgcagagccaaattgtaggcattccag 34992848  T
Q  198 ttcctaac-tctaatgtgcgctgaactccaccgtcacca 235  Q
    |||||||| ||||||||||| |  |||||||| ||||||    
T  34992847 ttcctaacttctaatgtgcgttcgactccaccatcacca 34992809  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 259 - 434
Target Start/End: Complemental strand, 34992120 - 34991949
Alignment:
Q  259 tgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaaccaggtagatacactactagtacaataaattataaattacataaaact 358  Q
    ||||| |||| |||||||||||||||| |||||||  |||||||  ||||||||||||||||||||||   |||||  ||||||||||||||||||||||    
T  34992120 tgtagcatagcacaaagcattgatacggaaatgatatcgtcaacctaataaaccaggtagatacacta---gtacagcaaattataaattacataaaact 34992024  T
Q  359 tcacnnnnnnnattttaaaatagacagaagggagatcaacagagaattaaggacttgcaatccttgaaaggaaaac 434  Q
    |||        ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  34992023 tca-attttttattttaaaatagatagaagggagatcaacagagaattaaggtcttacaatccttgaaaggaaaac 34991949  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 34986124 - 34986023
Alignment:
Q  98 tgcggctgatatggtgttctgagcgcatatataattccattgcaaactgaaggcaatttaagtgctctgattctgaagagccaaattgtaggcattccag 197  Q
    |||||||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  34986124 tgcggctgatatggtgttctgagcacata----attccattgcaaactgaaggcaatttaagtgctcagattctgcagagccaaattgtaggcattccag 34986029  T
Q  198 ttccta 203  Q
    ||||||    
T  34986028 ttccta 34986023  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 34986669 - 34986610
Alignment:
Q  246 aaacctgtaaaagtgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactca 305  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  34986669 aaacctgtaaaagtgtagcatagtacaaagcattgatacgaaaatgataccgtcaactca 34986610  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 34985300 - 34985219
Alignment:
Q  379 tagacagaagggagatcaacagagaattaaggacttgcaatccttgaaaggaaaa--ctcacaacatgttgcaaacaataca 458  Q
    |||| ||||||||||||||||||||||||||| |||  |||||||||||||||||  |||||||||||||||| ||||||||    
T  34985300 tagatagaagggagatcaacagagaattaaggtcttataatccttgaaaggaaaactctcacaacatgttgcatacaataca 34985219  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 34985365 - 34985295
Alignment:
Q  251 tgtaaaagtgtagtatagtacaaagcattgatacgaaaatgatgccgtcaactcaataaaccaggtagata 321  Q
    ||||||||||||| |||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  34985365 tgtaaaagtgtagcatagtacagagcgttgatacgaaaatgacgccatcaactcaataaaccaggtagata 34985295  T

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