View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_16 (Length: 487)
Name: NF16912_low_16
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 25575215 - 25574751
Alignment:
| Q |
17 |
caatgcgaccctggttaggaacaacatggccaccttcatctggaaagtctcttcgacgannnnnnnnn-ctccatcgcaatacttaaaaccatctcgaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25575215 |
caatgcgaccctggttaggaacaacatggccaccttcatctggaaagtctcttcgacgatttttttcttctccatcgcaatacttaaaaccatctcgacg |
25575116 |
T |
|
| Q |
116 |
atactccccctcttcaacagactcgcccctttcaacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25575115 |
atactccccctcttcaacagactcgcccctttcaacaatatctgtattgtgattccatttctcccatccatcaaaaccttctttcctttctctttcgccc |
25575016 |
T |
|
| Q |
216 |
aatctgtcaaaaatcctcttaccttgcaactcataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttgg |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25575015 |
aatttgtcaaaaatcctcttaccttgcaactcataggtatttccttttctttcaccacccctatcaaattttgcaaaatgtgactccggttgttgtttgg |
25574916 |
T |
|
| Q |
316 |
accacatcaaagtcaacagttccccacatatctttctacctttcaattctctcaaagctttctccgcatccgaacggaaatcaaacaccacaaaaccata |
415 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25574915 |
accacatcaaagtcaacagttccccacatatctttgtacctttcaattccctcaaagctttctccgcatccaaacggaaatcaaacaccacaaaaccata |
25574816 |
T |
|
| Q |
416 |
accttcttttttcacctgaacattacaatgcccaaatctaccaaaaactcgctcaagttcatctc |
480 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25574815 |
accttcttttttcacctgaacattacaacgcccaaatctaccaaaaactcgctcaagttcatctc |
25574751 |
T |
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