View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16912_low_20 (Length: 461)
Name: NF16912_low_20
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_20 |
 | |
|
| [»] scaffold0815 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0815 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0815
Description:
Target: scaffold0815; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 112 - 459
Target Start/End: Original strand, 596 - 945
Alignment:
| Q |
112 |
ttttctcatttaatcaaataattcatcattataatttatcatcgatatgaaactacttaatttggaaatagaatataatcatttgacctcatatattaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
596 |
ttttctcatttaatcaaataattcatcattataatttatcatccatatgaaactacttaatttggaaatagaatataaccatttgagctcatatattaaa |
695 |
T |
|
| Q |
212 |
aattgcttcacataaatcgtata--tacacacactatatacactaggaacacaaagtatcaacaaggtaggataattgatcttcattaagagccatgaat |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
696 |
aattgcttcacataaatcgtatatatacacacactatatacactaggaacacaaagtatcaacaaggtaagttaattgatcttcattaagagccatgaat |
795 |
T |
|
| Q |
310 |
aaaaactttaactaattagctgcatgattaagatgttagtctcataatagttatatgtgtatattcacggcactaagactcgaagtatcaaagaaaatcc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
796 |
aaaaactttaactaattagctgcatgattaagatgttagtctcataatagttatatgtgtatattcacggcactaagactccaagtatcaaagaaaatcc |
895 |
T |
|
| Q |
410 |
gcactgatagcaaaacgcatataacaccaattggcacctatgcttctcca |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
896 |
ccactgatagcaaaacgcatataacaccaattggcacctaggctactcca |
945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 33186114 - 33186146
Alignment:
| Q |
8 |
gacatcatcatttaaacaaatgcagcaagtcac |
40 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33186114 |
gacatcatcatttaaacaaatgcagcaagtcac |
33186146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University