View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_21 (Length: 453)
Name: NF16912_low_21
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 3924160 - 3923726
Alignment:
| Q |
19 |
aataaaactcaaactttaggtctaatagcgaaaataatatatgtttactaagtttgataagaaaaaagttacatattcattccaccnnnnnnn--gaaag |
116 |
Q |
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| T |
3924160 |
aataaaactcaaactttaggtctaatagcgaaaataatatatgtttagtaagtttgataagaaaaaagttacatattcattccaccaaaaaaaaagaaag |
3924061 |
T |
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| Q |
117 |
agttacatattcataaacaaaaagttctatattttaaaacttgtttagggcttataa-------acaatgaaagggcttgaagagaaatcttccaaactt |
209 |
Q |
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| T |
3924060 |
agttacatattcataaacaaaaagttctatattttaaaacttgtttagggcttataatttataaacaatgaaagggctagaagagaaatcttccaaactt |
3923961 |
T |
|
| Q |
210 |
aatttattccact-gaaaatattatttagtcctaagatgagcccaaaccaaacaaaaacagcaagtttcatgtagaaacttcatcaaccacacgtaaact |
308 |
Q |
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| T |
3923960 |
aatttattccaccagaaaatattatttagtcccaagatgagcccaaaccaaacaaaaacagcaagtttcatgtagaaacttcatcaaccacacgtaaact |
3923861 |
T |
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| Q |
309 |
ctatttcttacaatgtgacttcccactctatctataacaaaattacaattgcaaatgcatagatgaggaaccatccaaataccattatgtcatatttagg |
408 |
Q |
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| T |
3923860 |
ctatttcttacaatgtgacttcccactctatctataacaaaattacaattgcaaatgcatagatgaggaaccatccaaataccattatgtcatatttagg |
3923761 |
T |
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| Q |
409 |
aagaaaattagaattcacccacctgcatctttcat |
443 |
Q |
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| T |
3923760 |
aagaaaattagaattcacccacctgcatctttcat |
3923726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 7421245 - 7421304
Alignment:
| Q |
377 |
aaccatccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcat |
436 |
Q |
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| T |
7421245 |
aaccacccaaataccatgatgtgatattttggaagaaaattagaattcaaccaccagcat |
7421304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 14202065 - 14202120
Alignment:
| Q |
385 |
aaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatcttt |
440 |
Q |
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| T |
14202065 |
aaataccatgatgtcatatttaggaagaaatttagaattcaaccactagcatcttt |
14202120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 13573961 - 13574018
Alignment:
| Q |
383 |
ccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatcttt |
440 |
Q |
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| T |
13573961 |
ccaaatagcatgatattatattaaggaagaaaattagaattcaaccaccagcatcttt |
13574018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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