View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_22 (Length: 452)
Name: NF16912_low_22
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 39628334 - 39627912
Alignment:
| Q |
14 |
agatgcttataaatattacaatttgtctaaaaattgactgatactcaagtttttgcgagcatatccaaaattcaaaagaatcaaaattgatacgtgtaat |
113 |
Q |
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| T |
39628334 |
agatgcttataaatattacaatttgtctaaaaattgactgatactcaagtttttgcgagcatatccaaaattcaaaagaatcaaaattgatacgtgtagt |
39628235 |
T |
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| Q |
114 |
cattaaacttacgtattccttcaaaatcatcaacaagcctagctccaggtatggtcacaatgctataagataataatatttcacgtatttcagtagttta |
213 |
Q |
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| T |
39628234 |
cattaaacttacgtattccttcaaaatcatcaacaagcctagctccaggtatggtcgcaatgctataagataataatatttcacttatttcagtagttta |
39628135 |
T |
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| Q |
214 |
atactttccagaaatgcaagcaaaaaacaaacacacaaaataaacctttgcgccactcctacataaagttgtatttattgacaatgtagagtcaagaaga |
313 |
Q |
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| T |
39628134 |
atactttccagaaatgcaagcaaaaaacaaacaca-aagataaacctttgcgccactcctacataaagttgtatttattgacaatgtagagtcaagaaga |
39628036 |
T |
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| Q |
314 |
catttaggccttttcatgttgttaagcattatatcaaggcaaatgctagattatcgccaacatttcaaaactatatactgttcaatacatccctagcaaa |
413 |
Q |
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| T |
39628035 |
catttaggccttttcatgttgttaagcattatatcaaggcaaatgctagattatcgccaacatttcaaaactatatactgttcaatacatccctagcaaa |
39627936 |
T |
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| Q |
414 |
agtttctacgaagatgtttgtttc |
437 |
Q |
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| T |
39627935 |
agtttctaggaagatgtttgtttc |
39627912 |
T |
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