View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_24 (Length: 432)
Name: NF16912_low_24
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 30400487 - 30400892
Alignment:
| Q |
10 |
catcatcaataacacactggcatgggtggctgcattagctcaagggtcaaaactgagaggaagagtcattcatataacggtaataaataacactgttatt |
109 |
Q |
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| T |
30400487 |
catcatcaataacacactggcatggatggctgcattagctcaagggtcaaaactgagaggaagagtcattcatataacggtaataaataacactgttatt |
30400586 |
T |
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| Q |
110 |
cacattttcatttcttaattaatgaccaatcttctgtatgtttgtgaataaattttgctacttggtatggaaatttgttttaaatttttgagggggtaat |
209 |
Q |
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| T |
30400587 |
cacattttcatttcttaattaatgaccaatcttgtgtatgtttgtgaataaattttgctacttggtatggaaatttgttttaaatttttgagggggtaat |
30400686 |
T |
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| Q |
210 |
ctgttgttacattctcgtctctatacaattcatatacttttaattattgagaataaatcttggatttaggtaagaagaccgttagttcagccaacgcaaa |
309 |
Q |
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| T |
30400687 |
ctgttgttacattcttgtctctatacaattcatatacttttaattattgagaataaatcttggatttaggtaagaagaccgttagttcagccaacgcaaa |
30400786 |
T |
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| Q |
310 |
aaagttaccttatttcacaagaatgtacttagg-aaaaaatgtagttcatttatatgattgcaataatgttactaaatctgtaatttcttttcttctaca |
408 |
Q |
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| T |
30400787 |
aaagttaccttatttcacgagaatgtacttaggaaaaaaatgtagttcatttatatgattgcaataatgttactaaatctgtaatttcttttcttctata |
30400886 |
T |
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| Q |
409 |
gtctcc |
414 |
Q |
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| T |
30400887 |
gtctcc |
30400892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 30388308 - 30388344
Alignment:
| Q |
92 |
ataaataacactgttattcacattttcatttcttaat |
128 |
Q |
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| T |
30388308 |
ataaataacattgttattcacattttcctttcttaat |
30388344 |
T |
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