View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_25 (Length: 432)
Name: NF16912_low_25
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 143 - 336
Target Start/End: Original strand, 45040921 - 45041114
Alignment:
| Q |
143 |
caataggcaactaccatgattatttttctgattaatttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgct |
242 |
Q |
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| T |
45040921 |
caataggcaactaccatgattatttttctgattaatttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgct |
45041020 |
T |
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| Q |
243 |
tacggcactgttgtaataaggattgtactgtggtttcatctgatgattataataagcaggtgcaccatagaaaatgaaaggatcaattatcaca |
336 |
Q |
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| T |
45041021 |
tacggcactgttgtaataaggattgtactgtggtttcatccgatgattataataagcaggtgcaccatagaaaatgaaaggatcaattatcaca |
45041114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 45040791 - 45040895
Alignment:
| Q |
21 |
aagtttagagtaacatattagtcaagaatgtattacgtacataatgaac-tagcctcatattatataatcaacacgatatacatcaagctacttttacag |
119 |
Q |
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| T |
45040791 |
aagtttagagtaacatattagtcaagaatgtattacgtacataatgaaaatagcctcatattatataatcaacacgatatacatcaagctacttttacag |
45040890 |
T |
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| Q |
120 |
ataat |
124 |
Q |
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| T |
45040891 |
ataat |
45040895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 45035717 - 45035858
Alignment:
| Q |
193 |
atataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcactgttgtaataaggattgtactgtggtttcatctgatgattat |
292 |
Q |
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| T |
45035717 |
atataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac---ggtagtatgaattgtattgtggattcatctgatgattat |
45035813 |
T |
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| Q |
293 |
aata---agcaggtgcaccatagaaaatgaaaggatcaattatca |
334 |
Q |
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| T |
45035814 |
aataggtagtaggtgtaccatagagcatgaaaggattaattatca |
45035858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 46175121 - 46175219
Alignment:
| Q |
158 |
atgattatttttctgattaa------tttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac |
250 |
Q |
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| T |
46175121 |
atgattatttttctgattaaattttttttttatcaaacatagtatataaaatttagaggatgacacagccattaggatcctcttcaacgcttatggcac |
46175219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 45043035 - 45043107
Alignment:
| Q |
178 |
tttttaccaaaaataatataaaaaatttagatgatgacacagccattaggatcctcttcaacgcttacggcac |
250 |
Q |
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| T |
45043035 |
tttttatcaaacatagtatataaaatttagaggatgacacagccattaggatcctcttcaacgcttatggcac |
45043107 |
T |
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