View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_28 (Length: 403)
Name: NF16912_low_28
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 224 - 390
Target Start/End: Original strand, 13469522 - 13469689
Alignment:
| Q |
224 |
ccaactttggagcccttatttaatgacaattgttttggctcaaccaaagaaatcaacaaagggtcggacgaatgagaaatatgtagcaccttttgacatg |
323 |
Q |
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| T |
13469522 |
ccaactttggagcccttatttaatgacaattgttttggctcaaccaaagaaatcaacaaagggtcgaacgaatgagaaatatgtagcaccttttgacatg |
13469621 |
T |
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| Q |
324 |
cgac-ttggatcctttgcttttgtctcctttcaaaatatgtgtctgtctttcttttaatcttctctct |
390 |
Q |
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| T |
13469622 |
cgactttggatcctttgcttttgtctcctttcaaaatatgtgtctgtctttcttttgatcttctctct |
13469689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 13469298 - 13469460
Alignment:
| Q |
1 |
ttatttacaaatccacatatattttttgcaaagtacaattctacatattaattataaattatttgtatcataattt-caacttaattatatgaactaaaa |
99 |
Q |
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| T |
13469298 |
ttatttacaaatccacatatattttttgtaaagtacaat-ctacatattaattataaattatttgtatcataattttcaacttaattatatgaactaaaa |
13469396 |
T |
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| Q |
100 |
cacgtgtttaggttcaattcaattttgcttttatgtaaatttagttatttgaaaaattcaaagg |
163 |
Q |
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| T |
13469397 |
cacgtgtttaggttcaattcaattttgcttttatgtaaatttagttatttgaaaaattcaaagg |
13469460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 10785576 - 10785696
Alignment:
| Q |
39 |
ttctacatattaattataaattatttgtatc-ataatttcaacttaattatatgaactaaaacacgtgtttaggttcaattcaattttgcttttatgtaa |
137 |
Q |
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| T |
10785576 |
ttctacatattaatcataaattatttgtatcaagattttaaagttaattat-tgaattaaaacacatg-ttcggttcaatttatatttgttttgatgtaa |
10785673 |
T |
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| Q |
138 |
atttagttatttgaaaaattcaa |
160 |
Q |
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| T |
10785674 |
atttggttatatgaaaaattcaa |
10785696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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