View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_29 (Length: 395)
Name: NF16912_low_29
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 31819538 - 31819909
Alignment:
| Q |
6 |
agtgagatgaactcttcttaaactctaatatgtctaaaagaaaatgcttattaagaatcatacatgctgttaaacatcctagtatatatactttttagtg |
105 |
Q |
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| T |
31819538 |
agtgagatgaactcttcttaaactctaatatgtctaaaagaaaatgcttattaagaatcatacatgctgttaaacatcctagtatatatactttttagtg |
31819637 |
T |
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| Q |
106 |
catgcttagaattagggttatagcgggtttgctaaaattacaatgtatatatcatggtttcgttgaaacttcataatgtaatctatgtaaatcataattc |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31819638 |
catgcttaaaattagggttatagcgggtttgctaaaattacaatgtatatatcatggtttcgttgaaacttcatgatgtaatctatgtaaatcataattc |
31819737 |
T |
|
| Q |
206 |
atgatgactcagtataactctatcaaactcaccgtaaatctaaatatgcatcgaataattttcttaaaatctaaaatatcnnnnnnngaaataaagttgg |
305 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
31819738 |
atgatgactcactataactctatcaaactcaccgtaaatctaaatatgcatcgaataattttcttaaaatctaaaatatcgaaaaaagaaatcaagttgg |
31819837 |
T |
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| Q |
306 |
attttaataagacaaccaaaatatgtgtcactgcaagtagtcacaaagttatagcctcacaatccggagcat |
377 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
31819838 |
attttaataagacaaccaaaatatgtgtgactgcatgtagtcacaaagttatggcctcacaatccggagcat |
31819909 |
T |
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