View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_3 (Length: 696)
Name: NF16912_low_3
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 125 - 525
Target Start/End: Complemental strand, 23213864 - 23213443
Alignment:
| Q |
125 |
acgcttggggtcagatacacctatcatcccacatcattcactgatttgagcgtcgtagcacgtacaagtcaccaccccccattcacctggagaagaaggt |
224 |
Q |
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| T |
23213864 |
acgctcggggtcagatacacctatcatcctacatcattcactgatttgagcgtcgtagcatgtacaagtcaccaccccc-attcacctggagaagaaggt |
23213766 |
T |
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| Q |
225 |
catgggcgacaaagaagaagggaatagccaatgaa-gtgtcctactaaaatatcattcaactccatcaatccaaagataccaggtctggcagaatcataa |
323 |
Q |
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| T |
23213765 |
catgggcgacagagaagaagggaatagccaatgaaagtgtcctactaaaaggtcattcaactccatcaatccaaagataccaggttcggcagaatcataa |
23213666 |
T |
|
| Q |
324 |
ttcaattcaaatcattcgacttacaattgatctgttgacacaagtcgacttacaccaaatcttaactacttaatacaatagaacatgtggtttaaaatat |
423 |
Q |
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| T |
23213665 |
ttcaattcacatcattcgacttacaattgatctgttgacaccagtcgacttacaccaaatcttaattatttagtacaatagaacatgtggtttaaaatat |
23213566 |
T |
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| Q |
424 |
tcaaacaaaa--ttaatgtgag-------------------tcttttcagaagtcatgagaaatagatgtaatttttgtttatgattaaagttgataata |
502 |
Q |
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| T |
23213565 |
tcaaagaaaaagttaacgtgagtcctctttttaatatgtcctcttttcaaaagtcatgagaaatagatgtaatttttgtttatgactaaagttgataata |
23213466 |
T |
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| Q |
503 |
acatagataaacttgaaaacttt |
525 |
Q |
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| T |
23213465 |
acataaacaaatttgaaaacttt |
23213443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 23214036 - 23213910
Alignment:
| Q |
1 |
tgaacaaccaacatggtgcatggcacaaataatccaagaagcaaacaatcacaactatccttcaaaggactacaactatccctaaaaggaccatggttgt |
100 |
Q |
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| T |
23214036 |
tgaacaaccaacatggtccatggcacaaataatccaaggagcaaacaatcacaactatccttcaaaagactacaactatccctaaaaggaccatgattgt |
23213937 |
T |
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| Q |
101 |
ccttccacaatagctgtctaggtaacg |
127 |
Q |
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| T |
23213936 |
ccttccacaataggtgtctaggtaacg |
23213910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 598 - 679
Target Start/End: Complemental strand, 23213310 - 23213229
Alignment:
| Q |
598 |
gcacttatggagatgcaagagagccttctaaaaagtagtttcgttgttgaaagtcttttatatacattcatgagtcgagtgt |
679 |
Q |
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| T |
23213310 |
gcacttatggagatgcaagagagccttctaaaaaatagtttcgttgttgaaagtcttttatatacattcgtgagtcgagtgt |
23213229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 23213411 - 23213366
Alignment:
| Q |
497 |
ataataacatagataaacttgaaaactttagtcatactggttgtcc |
542 |
Q |
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| T |
23213411 |
ataataacataaataaacttgaaaactttagtcatactggttgtcc |
23213366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9854736 - 9854834
Alignment:
| Q |
1 |
tgaacaaccaacatggtgcatggcacaaataatccaagaagcaaacaatcacaactatccttcaaaggactacaactatccctaaaaggaccatggttg |
99 |
Q |
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||||||||||||||||| | |||||||||| ||||| ||||| || |||||||| |||||||||| || |||| |||| ||| |||||| ||||||| |
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| T |
9854736 |
tgaacaaccaacatggtccgtggcacaaatcttccaaagagcaagcactcacaactgtccttcaaagaacaacaaatatcgctataaggacaatggttg |
9854834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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