View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_30 (Length: 393)
Name: NF16912_low_30
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 39205132 - 39204748
Alignment:
| Q |
1 |
accattgataaatgtcacagtaaatcttcattaaaattgatggttctatctaaccttacatgacacatgtcatagttaaaatttagtttcattatagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39205132 |
accattgataaatgtcacagtaaatcttcattaaaattgatggttctatctaaccttacatgacacatgtcatagttaaaatttagtttcattatagaaa |
39205033 |
T |
|
| Q |
101 |
atgataccatatacnnnnnnnnnnnnnnnn-gaaaagtgctaagtacattattatgacaaagattatgtttcattaattaaagacaaattatggattatg |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39205032 |
atgataccatatacctcttttttttttttttgaaaagtgctaagtacattattatgacaaagattatgtttcattaattaaagataaattatggattatg |
39204933 |
T |
|
| Q |
200 |
acaaagattaaatctttnnnnnnntgaaacttgtttgaactggaagaaagaagtgaaaaagctaaaccagttgacttgactttgctaggttccttctacc |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39204932 |
acaaagattaaatctttaaaaaaatgaaacttgtttgaactggaagaaagaagtgaaaaagctaaaccagttgacttgactttgctaggttccttctacc |
39204833 |
T |
|
| Q |
300 |
agcactcttctttcacttgcaatttccattgaaacaatgcatcttgaggtatatgaaaaagtctcactctctttcttagtataat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39204832 |
agcactcttctttcacttgcaatttccattgaaacaatgcatcttgaggtatatgaaaaagtctcactctctttcttagtctaat |
39204748 |
T |
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