View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16912_low_33 (Length: 382)
Name: NF16912_low_33
Description: NF16912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16912_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 199 - 364
Target Start/End: Complemental strand, 31504264 - 31504099
Alignment:
| Q |
199 |
gtggcgcgtgcaggttgtagagagtgacagagaagtgagtaggataagatgaatgaaagagacaaaaagtacataaacttcgctcatctagtcatctatg |
298 |
Q |
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| T |
31504264 |
gtggcgcgtgcaggttgtagagagtgacagagaagtgagtaggataagatgaatgaaagagacaaaaagtacataaacttcgctcatctggtcatctatg |
31504165 |
T |
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| Q |
299 |
tattattggtcaacacacaaaatatttatataagtacattctttgtgttgatgtataatatacttc |
364 |
Q |
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| T |
31504164 |
tattattggtcaacacacaaaatatttatataagtacattctttgtgttgatgtataatatacttc |
31504099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 31504446 - 31504325
Alignment:
| Q |
18 |
gaatcccaaaaactagttctttaaggtaacaaggtacaataatgtaatccaaaacaaaccctgcaaaaacctctggtgctactcacgacagcactgagca |
117 |
Q |
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| T |
31504446 |
gaatcccaaaaactagttctttaaggtaacaaggtacaataatgtaatccaaaacaaaccctgcaaaaacctctggtgctactcacgacagcactgagca |
31504347 |
T |
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| Q |
118 |
tgaaagcaacttatgatactgc |
139 |
Q |
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| T |
31504346 |
tgaaagcaacttatgatactgc |
31504325 |
T |
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